Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS49175 Genome accession   NZ_CP108081
Coordinates   11082772..11083434 (+) Length   220 a.a.
NCBI ID   WP_328847268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 11077772..11088434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS49150 (OG718_49150) - 11078230..11079081 (-) 852 WP_328847266.1 class I SAM-dependent methyltransferase -
  OG718_RS49155 (OG718_49155) - 11079281..11079757 (+) 477 WP_143642377.1 DUF6069 family protein -
  OG718_RS49160 (OG718_49160) - 11079831..11080733 (+) 903 WP_143642375.1 hypothetical protein -
  OG718_RS49165 (OG718_49165) - 11080738..11081358 (-) 621 WP_143642373.1 hypothetical protein -
  OG718_RS49170 (OG718_49170) - 11081600..11082742 (+) 1143 WP_328847267.1 sensor histidine kinase -
  OG718_RS49175 (OG718_49175) vraR 11082772..11083434 (+) 663 WP_328847268.1 response regulator transcription factor Regulator
  OG718_RS49180 (OG718_49180) - 11083514..11085010 (+) 1497 WP_328847269.1 metallophosphoesterase family protein -
  OG718_RS49185 (OG718_49185) - 11085129..11085485 (+) 357 WP_328847270.1 hypothetical protein -
  OG718_RS49190 (OG718_49190) - 11085711..11087444 (+) 1734 WP_328847271.1 GAF domain-containing protein -
  OG718_RS49195 (OG718_49195) - 11087430..11088425 (-) 996 WP_328847272.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23701.39 Da        Isoelectric Point: 6.2344

>NTDB_id=653064 OG718_RS49175 WP_328847268.1 11082772..11083434(+) (vraR) [Streptomyces sp. NBC_00258]
MEDQEPAPPVRVLVVDDQRLIRDGIASLLAIRPGIAVVGTAVDGRDAVAKALELGPDVVLMDVRMPEMDGIEAVAVLRCR
APGCRVVMLTTFEDEEYVVQALRAGAHGYLLKDLPAEELAHAVRLAHAGVTQLDSSVARHLTASLPAPTPNSTEPVAAVL
SPRETDILRLVAQGHTNREIAARLYLSEGTVKNHVSRILTRLALRDRTQAALRARDLGLL

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653064 OG718_RS49175 WP_328847268.1 11082772..11083434(+) (vraR) [Streptomyces sp. NBC_00258]
ATGGAAGATCAGGAGCCGGCGCCGCCGGTCCGGGTGCTGGTGGTCGACGACCAGCGGCTCATCCGCGACGGGATCGCCTC
GCTGCTCGCCATCCGGCCGGGCATCGCGGTCGTCGGTACGGCCGTGGACGGCCGGGACGCCGTGGCGAAGGCACTCGAAC
TGGGCCCGGACGTCGTGCTCATGGACGTCCGGATGCCGGAGATGGACGGGATCGAAGCGGTCGCCGTCCTGCGGTGCCGG
GCCCCCGGGTGCAGGGTCGTCATGCTGACGACGTTCGAGGACGAGGAGTACGTCGTGCAGGCGCTGCGGGCCGGCGCCCA
CGGTTACCTGCTGAAGGACCTGCCGGCCGAGGAACTCGCCCATGCGGTCCGCCTGGCGCACGCGGGAGTCACCCAGCTCG
ACTCGTCCGTCGCCCGGCACCTCACCGCCTCTCTGCCGGCGCCCACCCCCAACTCCACCGAGCCTGTTGCCGCCGTTCTG
AGTCCGCGCGAGACGGACATCCTGCGGCTCGTGGCGCAGGGTCACACCAACCGGGAGATCGCCGCGCGGCTGTACCTCAG
CGAGGGCACGGTCAAGAACCACGTGTCCCGCATCCTCACCCGCCTCGCCCTGCGCGACCGCACCCAGGCGGCGCTGCGCG
CCCGGGACCTCGGCCTGCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.208

96.364

0.368
  degU Bacillus subtilis subsp. subtilis str. 168

35.874

100

0.364