Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS40805 Genome accession   NZ_CP108081
Coordinates   9156060..9156704 (+) Length   214 a.a.
NCBI ID   WP_143636957.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9151060..9161704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS40785 (OG718_40770) - 9151907..9152614 (-) 708 WP_143636967.1 transglycosylase SLT domain-containing protein -
  OG718_RS40790 (OG718_40775) - 9152915..9154042 (-) 1128 WP_328846558.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG718_RS40795 (OG718_40780) - 9154039..9154734 (-) 696 WP_328846559.1 SDR family NAD(P)-dependent oxidoreductase -
  OG718_RS40800 (OG718_40785) - 9154922..9156067 (+) 1146 WP_143636960.1 GAF domain-containing sensor histidine kinase -
  OG718_RS40805 (OG718_40790) vraR 9156060..9156704 (+) 645 WP_143636957.1 response regulator transcription factor Regulator
  OG718_RS40810 (OG718_40795) chpE 9156897..9157142 (+) 246 WP_055615420.1 chaplin ChpE -
  OG718_RS40815 (OG718_40800) - 9157326..9158114 (-) 789 WP_306940711.1 hypothetical protein -
  OG718_RS40820 (OG718_40805) - 9158237..9159028 (+) 792 WP_143636951.1 ABC transporter ATP-binding protein -
  OG718_RS40825 (OG718_40810) - 9159101..9159532 (+) 432 WP_143636948.1 NfeD family protein -
  OG718_RS40830 (OG718_40815) - 9159663..9160610 (+) 948 WP_328846560.1 SPFH domain-containing protein -
  OG718_RS40835 (OG718_40820) - 9160812..9161318 (-) 507 WP_143636943.1 HNH endonuclease -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23204.48 Da        Isoelectric Point: 5.0048

>NTDB_id=653045 OG718_RS40805 WP_143636957.1 9156060..9156704(+) (vraR) [Streptomyces sp. NBC_00258]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGVEALRRLRELDNPAR
VLIVTSFTEQRTVIPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEETNYGQGRGSSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVVDG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653045 OG718_RS40805 WP_143636957.1 9156060..9156704(+) (vraR) [Streptomyces sp. NBC_00258]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAAGTGGTCCGCCGGGGCCTGCGCACCTTCCTCGAAGTACA
GGACGACATCGAGGTCGTGGGAGAGGCGTCCGACGGCGCCGAAGGAGTCGCCCGCGCCGAGGAGTTGAAACCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCGTGGAGGCCCTGCGCAGGCTCCGCGAACTCGACAACCCCGCGCGC
GTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTGATCCCGGCCCTGCGCGCGGGCGCCGCCGGGTACGTCTACAA
GGACGTGGACCCCGACGCCCTCGCCGGAGCCATCCGCTCGGTCCACGCCGGACACATCCTGCTCCAGCCCGAGGTGGCCG
GTGCGCTGCTGTCCCAGGAGGAGACCAACTACGGCCAGGGGCGAGGCAGTTCACTCACCGAGCGGGAGCGCGAGGTGCTC
GGCCTGATCGCCGACGGGCGCTCCAACCGCGAGATCGCCCGCGCCCTCGTCCTCTCCGAGAAGACCGTCAAGACACATGT
CTCGAACATCCTGATGAAACTCGACCTCGCCGACCGAACACAGGCCGCGCTGTGGGCCGTACGCCATGGTGTGGTCGACG
GATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.226

99.065

0.458
  degU Bacillus subtilis subsp. subtilis str. 168

39.286

100

0.411