Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG718_RS30980 Genome accession   NZ_CP108081
Coordinates   6954408..6955817 (-) Length   469 a.a.
NCBI ID   WP_143640463.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6949408..6960817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS30955 (OG718_30935) - 6949541..6950149 (-) 609 WP_260695404.1 hypothetical protein -
  OG718_RS30960 (OG718_30940) - 6950179..6950736 (-) 558 WP_143640460.1 SigE family RNA polymerase sigma factor -
  OG718_RS30965 (OG718_30945) - 6951008..6951937 (-) 930 WP_143640461.1 A/G-specific adenine glycosylase -
  OG718_RS30970 (OG718_30950) - 6952142..6952963 (+) 822 WP_306939302.1 hypothetical protein -
  OG718_RS30975 (OG718_30955) disA 6953213..6954337 (-) 1125 WP_055618634.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG718_RS30980 (OG718_30960) radA/sms 6954408..6955817 (-) 1410 WP_143640463.1 DNA repair protein RadA Machinery gene
  OG718_RS30985 (OG718_30965) - 6956040..6957920 (+) 1881 WP_328845735.1 hypothetical protein -
  OG718_RS30990 (OG718_30970) - 6958018..6958872 (-) 855 WP_306939305.1 hypothetical protein -
  OG718_RS30995 (OG718_30975) - 6958944..6959876 (+) 933 WP_143640466.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49816.10 Da        Isoelectric Point: 8.0123

>NTDB_id=653023 OG718_RS30980 WP_143640463.1 6954408..6955817(-) (radA/sms) [Streptomyces sp. NBC_00258]
MAARTKTAKDRPSYRCTECGWQAAKWLGRCPECHAWGTIDEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYITGEESASQVRLRADRIKAIDDHLFLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMSQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDTQI
PTPRRTTSGLETSRVQMMLAVLEQRGRISAIGKRDIYTATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=653023 OG718_RS30980 WP_143640463.1 6954408..6955817(-) (radA/sms) [Streptomyces sp. NBC_00258]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGGCGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCATGCGTGGGGGACGATCGACGAGTACGGCGCGCCCGCGGTGCGTACGACGGCCCCCGGCC
GGGTCACCACGTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCGACCGCACGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTACCGGGCGCGGTCGTACTCGTGGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGGCGGCCAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCGGCGAGCCAGG
TCAGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTTTCTGGCGGCGGAGACGGATCTGGCCGCGGTCCTC
GGTCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCGTCGACTCCGTGCAGACGGTGGCCTCTCCGGAGATCGACGGCGC
CCCCGGAGGCATGTCCCAGGTGCGTGAGGTGGCCGGGGCCCTGATCCGTGCCTCCAAGGAGCGCGGCATGGCCACCCTGC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGACCGCGTCTCCTGGAGCATCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTCGTACGAGGCGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGGCTGACCGACCCGAGCGGTCTGTTCCTGACCCGCCGGGCCGAGCCCGTCCCCG
GCACCTGTCTGACCGTCACCCTGGAAGGCCGCCGCCCCCTGGTGGCCGAGGTCCAGGCGCTCACCGTGGACACCCAGATC
CCCACCCCGAGGCGCACGACCTCCGGTCTGGAGACCTCCCGGGTCCAGATGATGCTCGCCGTTCTGGAGCAGCGCGGCCG
GATCAGCGCCATCGGGAAGCGGGACATCTACACCGCGACGGTCGGCGGCGTGAAGCTCACCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCGCTGGCCAGCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTCGCCGAAGCCCATCGTCTGGGCTTCACCCACGCCCTTGT
TCCGAGCGATCCGGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGACATGGGGGACGCGCTGAGGGTCCTCC
CGAGGTCGCGTCGGCGAGAGGCCCCACGGGACGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409