Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG718_RS30150 Genome accession   NZ_CP108081
Coordinates   6756128..6756727 (+) Length   199 a.a.
NCBI ID   WP_055613476.1    Uniprot ID   A0ABZ1HE44
Organism   Streptomyces sp. NBC_00258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6751128..6761727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS30130 (OG718_30105) - 6751132..6752664 (+) 1533 WP_328845676.1 substrate-binding domain-containing protein -
  OG718_RS30135 (OG718_30110) - 6752738..6754249 (+) 1512 WP_328845677.1 M20/M25/M40 family metallo-hydrolase -
  OG718_RS30140 (OG718_30115) - 6754474..6755337 (-) 864 WP_260695386.1 SLATT domain-containing protein -
  OG718_RS30145 (OG718_30120) - 6755664..6756005 (+) 342 WP_079053092.1 YbaB/EbfC family nucleoid-associated protein -
  OG718_RS30150 (OG718_30125) recR 6756128..6756727 (+) 600 WP_055613476.1 recombination mediator RecR Machinery gene
  OG718_RS30155 (OG718_30130) - 6756850..6757509 (+) 660 WP_143640224.1 DUF5063 domain-containing protein -
  OG718_RS30160 (OG718_30135) - 6757554..6757970 (-) 417 WP_143640226.1 hypothetical protein -
  OG718_RS30165 (OG718_30140) - 6758049..6758861 (+) 813 WP_328845678.1 helix-turn-helix transcriptional regulator -
  OG718_RS30170 (OG718_30145) - 6758858..6759061 (+) 204 WP_328845679.1 DUF397 domain-containing protein -
  OG718_RS30175 (OG718_30150) - 6759027..6759758 (-) 732 WP_143640229.1 sulfite exporter TauE/SafE family protein -
  OG718_RS30180 (OG718_30155) - 6759963..6760487 (+) 525 WP_143640231.1 SgcJ/EcaC family oxidoreductase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21868.31 Da        Isoelectric Point: 4.9908

>NTDB_id=653018 OG718_RS30150 WP_055613476.1 6756128..6756727(+) (recR) [Streptomyces sp. NBC_00258]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653018 OG718_RS30150 WP_055613476.1 6756128..6756727(+) (recR) [Streptomyces sp. NBC_00258]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTGCGCCGTCTCGCTCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGTGCCACCTGCGGGAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCACGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCCATCGAGCGGACGCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTGGGCCCCGACGATCTGCGCATAAGGGAACTGCTCGCGCGCCTGGCGGACGGCA
CGGTCACGGAGCTCATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACCCGCCTCGCCAGCGGGCTGCCGGTGGGCGGTGACCTCGAGTACGCCGACGAGGTCACTCT
GGGCCGCGCCTTCGAGGGAAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457