Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   L4998_RS07400 Genome accession   NZ_CP091644
Coordinates   1433051..1433362 (-) Length   103 a.a.
NCBI ID   WP_002795361.1    Uniprot ID   A0A5T1JQB7
Organism   Campylobacter coli strain YH504     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428051..1438362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS07380 (L4998_07380) ctsE 1428918..1430480 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  L4998_RS07385 (L4998_07385) - 1430473..1431069 (-) 597 WP_002779313.1 CDC27 family protein -
  L4998_RS07390 (L4998_07390) ctsP 1431066..1431662 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  L4998_RS07395 (L4998_07395) ctsD 1431655..1433073 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  L4998_RS07400 (L4998_07400) ctsR 1433051..1433362 (-) 312 WP_002795361.1 hypothetical protein Machinery gene
  L4998_RS07405 (L4998_07405) nifJ 1433386..1436946 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  L4998_RS07410 (L4998_07410) - 1437050..1437688 (-) 639 WP_002784063.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12341.36 Da        Isoelectric Point: 5.2164

>NTDB_id=652983 L4998_RS07400 WP_002795361.1 1433051..1433362(-) (ctsR) [Campylobacter coli strain YH504]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIEEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=652983 L4998_RS07400 WP_002795361.1 1433051..1433362(-) (ctsR) [Campylobacter coli strain YH504]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGAGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1JQB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553