Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG718_RS17290 Genome accession   NZ_CP108081
Coordinates   3892844..3893623 (+) Length   259 a.a.
NCBI ID   WP_055617269.1    Uniprot ID   A0ABZ1HAP3
Organism   Streptomyces sp. NBC_00258     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3887844..3898623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS17275 (OG718_17260) - 3888265..3888408 (-) 144 WP_328842803.1 hypothetical protein -
  OG718_RS17280 (OG718_17265) - 3888729..3891623 (-) 2895 WP_328844545.1 vitamin B12-dependent ribonucleotide reductase -
  OG718_RS17285 (OG718_17270) nrdR 3891772..3892323 (-) 552 WP_143638101.1 transcriptional regulator NrdR -
  OG718_RS17290 (OG718_17275) dinR/lexA 3892844..3893623 (+) 780 WP_055617269.1 transcriptional repressor LexA Regulator
  OG718_RS17295 (OG718_17280) - 3893740..3895743 (-) 2004 WP_143638099.1 ATP-dependent DNA helicase -
  OG718_RS17300 (OG718_17285) - 3895880..3897838 (-) 1959 WP_328844546.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28129.86 Da        Isoelectric Point: 7.4237

>NTDB_id=652980 OG718_RS17290 WP_055617269.1 3892844..3893623(+) (dinR/lexA) [Streptomyces sp. NBC_00258]
MTTTADSATITAQDRSQGRFEPVHAMNEVNQEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMRE
IGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSTAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRI

Nucleotide


Download         Length: 780 bp        

>NTDB_id=652980 OG718_RS17290 WP_055617269.1 3892844..3893623(+) (dinR/lexA) [Streptomyces sp. NBC_00258]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGATTTGAGCCGGTGCATGCCATGAA
TGAAGTGAACCAGGAGGGGCCCAAGCCCACACGCTCCCTGCCGGGCCGACCTCCAGGTATCCGGGCGGACAGCTCCGGAC
TCACCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAACGGCGCGGATACCCGCCGTCGATGCGGGAG
ATCGGACAGGCCGTCGGCCTGTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCG
CCGCGACCCGCACCGACCGCGGGCCTACGAGGTCCGGGGGTCCGACCAGTCCACCGCGCAGCCCACCGACACGGCGGGCA
AACCGGCCGCGTCGTACGTCCCACTGGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTGTTCCCGCTGCCCCGGCAGCTGGTGGGTGACGGCGAGTTGTTCGTCCTGAAGGTCGTCGGAGACTCGATGATCGAGGC
CGCGATCTGTGACGGAGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCGGCCATGCTGG
ACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTGTGGCTGCTCCCGCACAACTCCGCGTACCAGCCG
ATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGATCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(52-115)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.238

81.081

0.367