Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   L4998_RS06340 Genome accession   NZ_CP091644
Coordinates   1217258..1217908 (+) Length   216 a.a.
NCBI ID   WP_002842554.1    Uniprot ID   -
Organism   Campylobacter coli strain YH504     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212258..1222908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS06320 (L4998_06320) - 1213114..1214568 (-) 1455 WP_002780172.1 MotA/TolQ/ExbB proton channel family protein -
  L4998_RS06325 (L4998_06325) fbaA 1214667..1215731 (-) 1065 WP_002793415.1 class II fructose-bisphosphate aldolase -
  L4998_RS06330 (L4998_06330) - 1215731..1216552 (-) 822 WP_002777551.1 peptidylprolyl isomerase -
  L4998_RS06335 (L4998_06335) nth 1216635..1217261 (+) 627 WP_002777553.1 endonuclease III -
  L4998_RS06340 (L4998_06340) CJE1441 1217258..1217908 (+) 651 WP_002842554.1 DNA/RNA non-specific endonuclease Regulator
  L4998_RS06345 (L4998_06345) - 1217918..1218550 (+) 633 WP_002780167.1 trimeric intracellular cation channel family protein -
  L4998_RS06350 (L4998_06350) - 1218629..1218847 (+) 219 WP_002780165.1 EexN family lipoprotein -
  L4998_RS06355 (L4998_06355) cmoA 1218851..1219555 (-) 705 WP_002788384.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  L4998_RS06360 (L4998_06360) - 1219559..1220395 (-) 837 WP_002780161.1 bifunctional riboflavin kinase/FAD synthetase -
  L4998_RS06365 (L4998_06365) - 1220364..1221113 (-) 750 WP_002788386.1 TlyA family RNA methyltransferase -
  L4998_RS06370 (L4998_06370) - 1221110..1222114 (-) 1005 WP_002786117.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25064.81 Da        Isoelectric Point: 9.8547

>NTDB_id=652974 L4998_RS06340 WP_002842554.1 1217258..1217908(+) (CJE1441) [Campylobacter coli strain YH504]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYTNCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFEV
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=652974 L4998_RS06340 WP_002842554.1 1217258..1217908(+) (CJE1441) [Campylobacter coli strain YH504]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATACCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGTT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTGAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

65.99

91.204

0.602
  CJE0566 Campylobacter jejuni RM1221

65.482

91.204

0.597