Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG766_RS20000 Genome accession   NZ_CP108080
Coordinates   4414626..4415303 (+) Length   225 a.a.
NCBI ID   WP_266381181.1    Uniprot ID   A0ACC6QKX2
Organism   Streptomyces sp. NBC_00259     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4409626..4420303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS19980 (OG766_19980) - 4409757..4410824 (+) 1068 WP_266381177.1 hypothetical protein -
  OG766_RS19985 (OG766_19985) - 4410942..4412084 (-) 1143 WP_266381178.1 NADH-quinone oxidoreductase subunit D -
  OG766_RS19990 (OG766_19990) - 4412302..4413297 (-) 996 WP_328725905.1 SAM-dependent methyltransferase -
  OG766_RS19995 (OG766_19995) - 4413393..4414592 (+) 1200 WP_266381180.1 sensor histidine kinase -
  OG766_RS20000 (OG766_20000) vraR 4414626..4415303 (+) 678 WP_266381181.1 response regulator transcription factor Regulator
  OG766_RS20005 (OG766_20005) - 4415419..4416528 (-) 1110 WP_328725906.1 DUF5937 family protein -
  OG766_RS20010 (OG766_20010) - 4416621..4416854 (+) 234 WP_266381183.1 hypothetical protein -
  OG766_RS20015 (OG766_20015) - 4416889..4418220 (-) 1332 WP_328725907.1 beta-eliminating lyase-related protein -
  OG766_RS20020 (OG766_20020) - 4418344..4419354 (+) 1011 WP_328725908.1 DUF2520 domain-containing protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24115.01 Da        Isoelectric Point: 5.4177

>NTDB_id=652910 OG766_RS20000 WP_266381181.1 4414626..4415303(+) (vraR) [Streptomyces sp. NBC_00259]
MTIRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIEVLRSTAVDVVLMDVRMPRLDGVEATSRICARPDAPKVL
ILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLGAIRSVHSGDAVVAPSTTRRLLDRFSPLLPSSGKEPQQKELERLTER
EREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLVRAGGGAGA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=652910 OG766_RS20000 WP_266381181.1 4414626..4415303(+) (vraR) [Streptomyces sp. NBC_00259]
ATGACCATCCGCGTGATGCTCGTCGACGATCAGGTGCTGCTGCGCACCGGTTTCCGGATGGTGCTCGCCGCCCAGCCCGA
CATGGAGGTCGTGGCGGAGGCCGGAGACGGGGCCGAGGCGATCGAGGTCCTCCGCTCGACGGCGGTCGACGTGGTGCTGA
TGGACGTCCGGATGCCCCGGCTTGACGGGGTGGAGGCGACGAGCCGCATCTGTGCCCGGCCGGACGCGCCGAAGGTGCTG
ATCCTGACGACGTTCGACCTCGACGAGTACGCCTTCTCGGGGCTGAAGGCGGGCGCCAGCGGATTCATGCTGAAGGACGT
TCCGCCGGGTGAACTGCTCGGCGCGATCCGCTCCGTGCACAGCGGCGACGCGGTGGTGGCCCCCTCCACGACGCGCCGGC
TGCTCGACCGCTTCTCGCCCCTGCTGCCGTCCTCCGGCAAGGAGCCGCAGCAGAAGGAGCTGGAGCGGCTCACCGAACGC
GAGCGGGAGGTCATGCTGCTCGTCGCCCAGGGCCTGTCGAACGGCGAGATCGCCGCCCGGCTGGTGCTGTCCGAGGCGAC
GGTGAAGACCCATGTGGGCCGCATCCTGACCAAGCTGGGCCTGCGGGACCGGGTGCAGGTCGTGGTCCTCGCGTACGAGA
GCGGTCTGGTGCGAGCCGGCGGCGGCGCGGGGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.914

98.222

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

99.111

0.378