Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG766_RS19350 Genome accession   NZ_CP108080
Coordinates   4278345..4278944 (+) Length   199 a.a.
NCBI ID   WP_266381078.1    Uniprot ID   A0ACC6QKG1
Organism   Streptomyces sp. NBC_00259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4273345..4283944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS19335 (OG766_19335) - 4275973..4276623 (+) 651 WP_266384290.1 hypothetical protein -
  OG766_RS19340 (OG766_19340) - 4276821..4277648 (-) 828 WP_266381077.1 SLATT domain-containing protein -
  OG766_RS19345 (OG766_19345) - 4277945..4278289 (+) 345 WP_266384292.1 YbaB/EbfC family nucleoid-associated protein -
  OG766_RS19350 (OG766_19350) recR 4278345..4278944 (+) 600 WP_266381078.1 recombination mediator RecR Machinery gene
  OG766_RS19355 (OG766_19355) - 4278937..4279605 (+) 669 WP_266381079.1 DUF5063 domain-containing protein -
  OG766_RS19360 (OG766_19360) - 4279781..4280533 (+) 753 WP_328725862.1 hypothetical protein -
  OG766_RS19365 (OG766_19365) - 4280726..4281997 (+) 1272 WP_266381081.1 aspartate kinase -
  OG766_RS19370 (OG766_19370) - 4282041..4283090 (+) 1050 WP_266381082.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21768.12 Da        Isoelectric Point: 5.1558

>NTDB_id=652909 OG766_RS19350 WP_266381078.1 4278345..4278944(+) (recR) [Streptomyces sp. NBC_00259]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCAICRDARRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=652909 OG766_RS19350 WP_266381078.1 4278345..4278944(+) (recR) [Streptomyces sp. NBC_00259]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACCGACGTCCGCCGCCTCGCCCATGCCCTGCTCGAGGTGAAGGACAAGGTCC
GCTTCTGCGCGGTATGCGGAAACGTCGCGCAGCAGGAACAGTGCGCCATCTGCCGGGACGCGCGCCGCGACCCGGCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACTCGTGAGTTCCGCGGGCGTTACCACGTGCTGGG
CGGTGCGATCAGCCCGATCGAAGGTGTCGGCCCGGACGATCTGCGCATCCGCGAACTGCTCGCGCGGCTCGCGGACGGCA
CGGTCACCGAGCTGATCCTGGCGACCGACCCCAATCTCGAGGGCGAGGCCACCGCGACGTACCTGGCGCGCATGATCAAG
CCCATGGGGCTGAAGGTGACGCGCCTCGCCAGCGGACTTCCCGTTGGCGGCGACCTGGAATACGCCGACGAGGTCACGCT
CGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457