Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG766_RS19215 Genome accession   NZ_CP108080
Coordinates   4250001..4250660 (+) Length   219 a.a.
NCBI ID   WP_266381050.1    Uniprot ID   A0ACC6QJZ1
Organism   Streptomyces sp. NBC_00259     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4245001..4255660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS19195 (OG766_19195) kynU 4245382..4246599 (+) 1218 WP_266381041.1 kynureninase -
  OG766_RS19200 (OG766_19200) - 4246677..4247564 (+) 888 WP_328725854.1 alpha/beta hydrolase -
  OG766_RS19205 (OG766_19205) - 4247722..4248570 (+) 849 WP_328725855.1 NAD(P)H-binding protein -
  OG766_RS19210 (OG766_19210) - 4248748..4250004 (+) 1257 WP_328727503.1 histidine kinase -
  OG766_RS19215 (OG766_19215) vraR 4250001..4250660 (+) 660 WP_266381050.1 response regulator transcription factor Regulator
  OG766_RS19220 (OG766_19220) - 4250679..4251887 (+) 1209 WP_328725856.1 cytochrome P450 -
  OG766_RS19225 (OG766_19225) - 4252018..4253634 (-) 1617 WP_328725857.1 ABC transporter permease -
  OG766_RS19230 (OG766_19230) - 4253631..4254542 (-) 912 WP_266381056.1 ABC transporter ATP-binding protein -
  OG766_RS19235 (OG766_19235) - 4254644..4255129 (+) 486 WP_266384285.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23537.21 Da        Isoelectric Point: 4.6274

>NTDB_id=652908 OG766_RS19215 WP_266381050.1 4250001..4250660(+) (vraR) [Streptomyces sp. NBC_00259]
MSIRVLIVDDQAMVREGFSVLLNAMPDIEVIGEAVNGREAVAQVAALRPDVVLMDIRMPELNGIEATREIVAADEDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSRISAAPRPPALAQIGDLTERE
TEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=652908 OG766_RS19215 WP_266381050.1 4250001..4250660(+) (vraR) [Streptomyces sp. NBC_00259]
ATGAGCATCCGTGTGCTGATCGTCGACGACCAGGCGATGGTCCGCGAGGGCTTCTCCGTCCTGCTGAACGCCATGCCCGA
CATCGAGGTGATCGGCGAGGCGGTCAACGGCCGCGAGGCCGTCGCCCAGGTCGCCGCCCTGCGCCCCGATGTCGTCCTCA
TGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCCACCCGGGAGATCGTCGCGGCCGACGAGGACGCGAAGGTGCTG
GTCCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCGCGCCGGGGCTTCCGGCTTCCTCCTGAAGGACGC
CTCCGCCCGGCAGCTCGCCGACGGCGTCCGGGTCGTGGCGGCCGGCGAGGCGCTCCTCGCCCCGACGGTCACCCGCCGTC
TGATCACCGAGTTCTCCCGCATCTCGGCGGCGCCCCGGCCCCCGGCGCTGGCCCAGATCGGCGATCTGACCGAACGCGAG
ACGGAGGTCCTCGTCCTGATCGCCCAGGGCCTGTCCAACGCGGAGATCGCCTCCCATCTCGTCGTCGCCGAGTCCACGAT
CAAGACCCACGTCAGCCGGATCCTGGTGAAACTGGGGCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCGTACGAGGCGA
GGCTGGTCACGCCGGGGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.24

99.087

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

42.202

99.543

0.42