Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG766_RS15840 Genome accession   NZ_CP108080
Coordinates   3566804..3567433 (+) Length   209 a.a.
NCBI ID   WP_328725607.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00259     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3561804..3572433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS15820 (OG766_15815) - 3562329..3562904 (+) 576 WP_266379522.1 TerD family protein -
  OG766_RS15825 (OG766_15820) - 3563077..3564507 (-) 1431 WP_328725606.1 M1 family metallopeptidase -
  OG766_RS15830 (OG766_15825) - 3564644..3565201 (-) 558 WP_328727484.1 heme-binding protein -
  OG766_RS15835 (OG766_15830) - 3565626..3566807 (+) 1182 WP_328727485.1 sensor histidine kinase -
  OG766_RS15840 (OG766_15835) vraR 3566804..3567433 (+) 630 WP_328725607.1 response regulator transcription factor Regulator
  OG766_RS15845 (OG766_15840) - 3567737..3568237 (+) 501 WP_266379529.1 hypothetical protein -
  OG766_RS15850 (OG766_15845) - 3568298..3568972 (-) 675 WP_266379532.1 pentapeptide repeat-containing protein -
  OG766_RS15855 (OG766_15850) - 3569099..3570100 (+) 1002 WP_328725608.1 zinc-binding dehydrogenase -
  OG766_RS15860 (OG766_15855) - 3570220..3571110 (-) 891 WP_266379538.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22011.43 Da        Isoelectric Point: 6.3436

>NTDB_id=652901 OG766_RS15840 WP_328725607.1 3566804..3567433(+) (vraR) [Streptomyces sp. NBC_00259]
MTVRILLCDDHAVVRAGLLALLGSEPGIEVVGEAGSGEEAVAMAAKLKPDVVLMDLQLGPGIDGAEATRRIAALPDARAH
VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHAAAQGRTTLSPPVAGRVMDRMRGAARPALTTRELDILDQLS
HGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=652901 OG766_RS15840 WP_328725607.1 3566804..3567433(+) (vraR) [Streptomyces sp. NBC_00259]
ATGACCGTAAGGATCCTGCTCTGCGACGACCACGCCGTCGTACGCGCCGGACTCCTCGCCCTGCTCGGCAGCGAACCCGG
CATCGAGGTGGTCGGCGAGGCGGGCAGCGGGGAGGAGGCCGTGGCCATGGCCGCGAAGCTCAAGCCGGACGTGGTGCTGA
TGGACCTCCAGCTGGGCCCCGGCATCGACGGCGCCGAGGCCACCCGCCGGATAGCCGCGCTCCCCGACGCGCGTGCCCAT
GTGCTCGTCCTCACGACGTACGACACGGACGCGGACATCACCCGCGCCATCGAGGCGGGCGCGACCGGCTATCTGCTGAA
GGCCGAACGCCCCGAGGAGCTCTTCGCCGCGATCCACGCCGCCGCACAGGGCCGCACGACCCTCTCACCGCCGGTCGCCG
GCCGAGTGATGGACCGCATGCGCGGCGCGGCCCGCCCGGCGCTCACCACACGCGAGCTGGACATCCTGGACCAGCTCTCC
CACGGCCTGGGCAACCGCGAGATCGCCCGCGCGCTGTTCATCAGCGAGGCGACGGTGAAGACGCATCTGGGCCGTATCTA
CGCGAAGTTGGGCGTCGACACGCGGGCGGGCGCGGTGGCCGTGGCGAAGGAGCAGAGGCTGCTTCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.284

100

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.383