Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG766_RS07430 Genome accession   NZ_CP108080
Coordinates   1660182..1660826 (-) Length   214 a.a.
NCBI ID   WP_266375200.1    Uniprot ID   A0ACC6QDL3
Organism   Streptomyces sp. NBC_00259     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655182..1665826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS07400 (OG766_07395) - 1655205..1655975 (-) 771 WP_266375212.1 sulfite exporter TauE/SafE family protein -
  OG766_RS07405 (OG766_07400) - 1656063..1657052 (-) 990 WP_266375210.1 SPFH domain-containing protein -
  OG766_RS07410 (OG766_07405) - 1657191..1657619 (-) 429 WP_266375208.1 NfeD family protein -
  OG766_RS07415 (OG766_07410) - 1657711..1658502 (-) 792 WP_266375206.1 ABC transporter ATP-binding protein -
  OG766_RS07420 (OG766_07415) - 1658633..1659430 (+) 798 WP_328724839.1 hypothetical protein -
  OG766_RS07425 (OG766_07420) - 1659768..1660010 (-) 243 WP_266375202.1 chaplin -
  OG766_RS07430 (OG766_07425) vraR 1660182..1660826 (-) 645 WP_266375200.1 response regulator transcription factor Regulator
  OG766_RS07435 (OG766_07430) - 1660819..1661976 (-) 1158 WP_266375198.1 GAF domain-containing sensor histidine kinase -
  OG766_RS07440 (OG766_07435) - 1662197..1662892 (+) 696 WP_328724841.1 SDR family NAD(P)-dependent oxidoreductase -
  OG766_RS07445 (OG766_07440) - 1662889..1663983 (+) 1095 WP_266375194.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG766_RS07450 (OG766_07445) - 1664288..1665052 (+) 765 WP_266375192.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23176.41 Da        Isoelectric Point: 5.6398

>NTDB_id=652883 OG766_RS07430 WP_266375200.1 1660182..1660826(-) (vraR) [Streptomyces sp. NBC_00259]
MADRTIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGDEGVARAEELRPDVVLMDVKMPGTDGIEALRKLRALDNPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDPHTGQGRGTSLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=652883 OG766_RS07430 WP_266375200.1 1660182..1660826(-) (vraR) [Streptomyces sp. NBC_00259]
GTGGCTGACAGGACTATCCGGGTGCTGCTGGTGGACGACCATCAGGTGGTGCGCCGCGGTCTGCGTACGTTCCTGGAGGT
GCAGGACGACATCGAGGTCGTGGGGGAGGCCGGAGACGGCGACGAGGGCGTCGCCCGCGCCGAGGAGCTGCGGCCCGACG
TCGTCCTGATGGACGTGAAGATGCCCGGCACCGACGGCATCGAGGCCCTGCGCAAGCTCCGCGCCCTCGACAACCCCGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTGCCCGCCCTGCGCGCCGGAGCCTCGGGCTACGTCTA
CAAGGACGTGGACCCGGACGCGCTGGCCGGTGCGATCCGCTCCGTGCACGCGGGCCATGTGCTGCTCCAGCCCGAGGTGG
CGGGCGCGTTGCTCGCCCAGGACGATCCCCACACCGGGCAGGGGAGGGGCACGTCACTCACCGAGCGCGAGCGTGAGGTG
CTCGGGCTCATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGGGCGCTGGTCCTTTCGGAGAAGACGGTGAAGACCCA
TGTGTCGAACATTCTGATGAAGCTCGATCTCGCGGACCGCACACAGGCGGCGCTCTGGGCCGTACGCCATGGGCTCACCA
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.673

97.196

0.444
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.402