Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG860_RS31680 Genome accession   NZ_CP108076
Coordinates   7131808..7132449 (+) Length   213 a.a.
NCBI ID   WP_328482743.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7126808..7137449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS31660 (OG860_31670) - 7127487..7128293 (-) 807 WP_328482739.1 transglycosylase SLT domain-containing protein -
  OG860_RS31665 (OG860_31675) - 7128624..7129733 (-) 1110 WP_328482740.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG860_RS31670 (OG860_31680) - 7129730..7130428 (-) 699 WP_328482741.1 SDR family NAD(P)-dependent oxidoreductase -
  OG860_RS31675 (OG860_31685) - 7130670..7131815 (+) 1146 WP_328482742.1 GAF domain-containing sensor histidine kinase -
  OG860_RS31680 (OG860_31690) vraR 7131808..7132449 (+) 642 WP_328482743.1 response regulator transcription factor Regulator
  OG860_RS31685 (OG860_31695) - 7132639..7132884 (+) 246 WP_328482744.1 chaplin -
  OG860_RS31690 (OG860_31700) - 7133078..7133317 (+) 240 WP_328482745.1 chaplin -
  OG860_RS31695 (OG860_31705) - 7133494..7134282 (-) 789 WP_328482746.1 hypothetical protein -
  OG860_RS31700 (OG860_31710) - 7134435..7135232 (+) 798 WP_328482747.1 ABC transporter ATP-binding protein -
  OG860_RS31705 (OG860_31715) - 7135286..7135717 (+) 432 WP_328482748.1 NfeD family protein -
  OG860_RS31710 (OG860_31720) - 7135860..7136819 (+) 960 WP_328482749.1 SPFH domain-containing protein -
  OG860_RS31715 (OG860_31725) - 7136928..7137434 (-) 507 WP_328482750.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23021.40 Da        Isoelectric Point: 5.1651

>NTDB_id=652858 OG860_RS31680 WP_328482743.1 7131808..7132449(+) (vraR) [Streptomyces sp. NBC_00267]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAAEGAEGVALAEELKPDVVLMDVKMPGMDGVEALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAVALLSQEEGNSGQGRGGALTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTR

Nucleotide


Download         Length: 642 bp        

>NTDB_id=652858 OG860_RS31680 WP_328482743.1 7131808..7132449(+) (vraR) [Streptomyces sp. NBC_00267]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACCTTTCTCGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCCGCCGAGGGCGCCGAAGGGGTCGCCCTCGCCGAGGAGCTCAAGCCCGACGTGG
TCCTGATGGACGTCAAGATGCCCGGCATGGACGGGGTCGAGGCCCTGCGCAGACTCCGTGAACTGGACAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCTGCCCTGCGCGCCGGCGCCGCCGGGTACGTCTACAA
GGACGTGGATCCCGATGCCCTGGCCGGCGCCATCCGCTCGGTCCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCCG
TCGCGCTCCTCTCCCAGGAGGAGGGCAACTCGGGTCAGGGCAGAGGCGGCGCGCTCACCGAACGGGAGCGCGAGGTGCTC
GGCCTGATAGCGGACGGCCGTTCCAACCGCGAGATCGCCCGCGCCCTGGTGCTGTCGGAGAAGACCGTCAAGACTCACGT
CTCGAACATCCTGATGAAGCTGGACCTCGCGGACCGCACACAGGCCGCGCTGTGGGCCGTACGCCATGGTCTGACCCGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

48.131

100

0.484
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.404