Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG860_RS00355 Genome accession   NZ_CP108076
Coordinates   62970..63653 (+) Length   227 a.a.
NCBI ID   WP_328475600.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 57970..68653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS00340 (OG860_00340) - 58130..60664 (-) 2535 WP_328475594.1 FtsX-like permease family protein -
  OG860_RS00345 (OG860_00345) - 60692..61465 (-) 774 WP_328484352.1 ABC transporter ATP-binding protein -
  OG860_RS00350 (OG860_00350) - 61810..62973 (+) 1164 WP_328475598.1 histidine kinase -
  OG860_RS00355 (OG860_00355) vraR 62970..63653 (+) 684 WP_328475600.1 response regulator transcription factor Regulator
  OG860_RS00360 (OG860_00360) - 64655..64837 (+) 183 Protein_71 trypsin-like serine protease -
  OG860_RS00365 (OG860_00365) - 65188..66885 (+) 1698 Protein_72 GAF domain-containing protein -
  OG860_RS00370 (OG860_00370) - 67196..67687 (+) 492 WP_328484353.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24717.38 Da        Isoelectric Point: 4.8999

>NTDB_id=652791 OG860_RS00355 WP_328475600.1 62970..63653(+) (vraR) [Streptomyces sp. NBC_00267]
MTIRVVVIDDQAMVRAGFTAVLTAQSDIDVVGEAANGREGIQVCRDLQPDVVLMDVRMPEMDGLEAARQLLNPPLGVTYC
PKVLMLTTYDIDTYIYEALKAGASGFLLKDAPITDLTRAVRVVAEGDALLSPSVTRRLITDFASNWPAAHADAGDNVRLR
SLTPRETEILRLVARGQSNTQIAQNLVVAEQTVKTHIGNIFAKLNLRDRAQAVIFAYESGLITPGDR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=652791 OG860_RS00355 WP_328475600.1 62970..63653(+) (vraR) [Streptomyces sp. NBC_00267]
ATGACGATCCGGGTAGTCGTCATCGACGACCAGGCCATGGTCCGCGCAGGCTTCACCGCCGTGCTGACCGCCCAGAGCGA
CATCGACGTGGTCGGCGAGGCCGCGAACGGGCGCGAGGGCATCCAAGTCTGCCGCGACCTCCAGCCCGACGTGGTCCTCA
TGGACGTGCGCATGCCGGAGATGGACGGTCTGGAGGCCGCCCGCCAGCTCCTGAACCCGCCGCTTGGGGTCACCTACTGC
CCCAAGGTGTTGATGCTCACCACCTACGACATCGACACCTACATCTATGAGGCGCTCAAGGCCGGCGCCAGCGGCTTCCT
ACTCAAGGACGCGCCCATCACCGACCTGACCCGCGCGGTCCGTGTCGTCGCGGAAGGCGACGCACTGCTGTCGCCCTCGG
TCACCCGCCGCCTCATCACCGACTTCGCCAGCAATTGGCCCGCGGCGCACGCGGATGCGGGCGACAACGTTCGACTGAGG
AGCCTGACTCCACGGGAGACCGAAATCCTCCGGCTCGTCGCCCGCGGCCAGAGCAACACGCAGATCGCCCAGAACCTCGT
CGTCGCCGAGCAGACCGTGAAAACCCATATCGGCAACATCTTCGCCAAACTCAATCTGCGCGACCGCGCCCAAGCGGTGA
TTTTCGCCTACGAGTCGGGACTGATAACCCCCGGCGACCGGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-120)

Bacterial regulatory proteins, luxR family (GerE)

(161-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.071

98.678

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.388