Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA28_RS24360 Genome accession   NZ_CP108075
Coordinates   5343971..5344639 (-) Length   222 a.a.
NCBI ID   WP_326711954.1    Uniprot ID   A0ABV4SI50
Organism   Streptomyces sp. NBC_00269     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5338971..5349639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA28_RS24340 (OHA28_24385) - 5339939..5340760 (+) 822 WP_326711950.1 diacylglycerol kinase -
  OHA28_RS24345 (OHA28_24390) - 5340769..5342394 (-) 1626 WP_326711951.1 ABC transporter permease -
  OHA28_RS24350 (OHA28_24395) - 5342391..5343344 (-) 954 WP_326711952.1 ABC transporter ATP-binding protein -
  OHA28_RS24355 (OHA28_24400) - 5343437..5343964 (+) 528 WP_326711953.1 MarR family transcriptional regulator -
  OHA28_RS24360 (OHA28_24405) vraR 5343971..5344639 (-) 669 WP_326711954.1 response regulator transcription factor Regulator
  OHA28_RS24365 (OHA28_24410) - 5344671..5346023 (-) 1353 WP_326716020.1 histidine kinase -
  OHA28_RS24370 (OHA28_24415) - 5346152..5347024 (-) 873 WP_326711955.1 alpha/beta hydrolase -
  OHA28_RS24375 (OHA28_24420) - 5347146..5347796 (+) 651 WP_326711956.1 TetR/AcrR family transcriptional regulator -
  OHA28_RS24380 (OHA28_24425) kynU 5347804..5349033 (-) 1230 WP_326711957.1 kynureninase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24081.94 Da        Isoelectric Point: 4.7568

>NTDB_id=652746 OHA28_RS24360 WP_326711954.1 5343971..5344639(-) (vraR) [Streptomyces sp. NBC_00269]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAIARVRELSPDVVLMDIRMPELNGIEATREIAAMDGSAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAQGEALLAPSVTRRLITEFSKLSEIPKLPAVANPGAFGELT
ERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVRPA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652746 OHA28_RS24360 WP_326711954.1 5343971..5344639(-) (vraR) [Streptomyces sp. NBC_00269]
ATGACCATCCGTGTACTGATCGCCGACGACCAGATGATGGTTCGCGAGGGCTTCTCGGTGCTGCTCAACGCGATGCCCGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGCGAGGCGATCGCCCGGGTCCGTGAGCTCTCCCCGGACGTCGTCCTCA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCCACCCGTGAGATCGCCGCGATGGACGGCAGTGCGAAGGTGCTC
GTCCTGACCACCTTCGACCTCGACGAGTACGTCTACCAGGCCCTGCGCGCCGGTGCCTCCGGATTCCTCCTCAAGGACGC
CTCGGCCCGCCAACTGGCCGACGGCGTAAGGGTGGTGGCCCAGGGGGAGGCGCTCCTCGCCCCCTCGGTCACCCGCCGCC
TGATCACGGAGTTCTCCAAGCTGTCCGAGATCCCGAAGCTGCCGGCGGTGGCGAACCCGGGGGCGTTCGGTGAGCTGACG
GAGCGCGAGACGGAGGTGCTGGTCCTGATCGCCCAGGGACTGTCGAACGCGGAGATCGCCGAACGGCTGGTCGTCGCCGA
GTCGACCATCAAGACCCACGTCAGCCGGGTCCTCGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCAGCGGTCTTCGCGT
ACGAGGCGCGGCTGGTCAGGCCCGCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.091

99.099

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

42.009

98.649

0.414