Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA28_RS23350 Genome accession   NZ_CP108075
Coordinates   5137554..5138963 (+) Length   469 a.a.
NCBI ID   WP_116511420.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00269     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5132554..5143963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA28_RS23330 (OHA28_23370) - 5132570..5133394 (-) 825 WP_326711792.1 sugar phosphate isomerase/epimerase -
  OHA28_RS23335 (OHA28_23375) - 5133602..5134534 (-) 933 WP_326711793.1 Ppx/GppA phosphatase family protein -
  OHA28_RS23340 (OHA28_23380) - 5134606..5135535 (+) 930 WP_326711794.1 hypothetical protein -
  OHA28_RS23345 (OHA28_23385) - 5135569..5137287 (-) 1719 WP_326711795.1 hypothetical protein -
  OHA28_RS23350 (OHA28_23390) radA/sms 5137554..5138963 (+) 1410 WP_116511420.1 DNA repair protein RadA Machinery gene
  OHA28_RS23355 (OHA28_23395) disA 5139076..5140200 (+) 1125 WP_116511422.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA28_RS23360 (OHA28_23400) - 5140539..5141333 (-) 795 WP_326711796.1 hypothetical protein -
  OHA28_RS23365 (OHA28_23405) - 5141519..5142160 (+) 642 WP_326711797.1 phosphatase PAP2 family protein -
  OHA28_RS23370 (OHA28_23410) - 5142161..5142625 (-) 465 WP_326716010.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49671.78 Da        Isoelectric Point: 8.0022

>NTDB_id=652739 OHA28_RS23350 WP_116511420.1 5137554..5138963(+) (radA/sms) [Streptomyces sp. NBC_00269]
MAARTKSGKDRPSYRCTECGWQTAKWLGRCGECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRSRRREAPRETEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652739 OHA28_RS23350 WP_116511420.1 5137554..5138963(+) (radA/sms) [Streptomyces sp. NBC_00269]
ATGGCTGCCCGTACGAAATCCGGCAAGGACCGACCGTCCTACCGCTGCACCGAGTGTGGCTGGCAGACGGCGAAATGGCT
GGGTCGCTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACCGCGCCCGGCC
GGGTCACGACGTCCGCCGTCCCGATCGGCCAGGTCGACGCCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTC
GACCGGGTCCTCGGCGGGGGCCTCGTCCCCGGCGCCGTCGTCCTGGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
CCTGCTCGACGTCGCCGCCAAGGCCGCCAGCGACGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCGGCCAGCCAGG
TCCGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTATCTCGCCGCCGAGACCGACCTGTCCGCGGTCCTC
GGCCACTTGGACGCCGTCAAGCCCAGCCTCCTGATCATGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGTGGCATGGCCACCCTCC
TCGTGGGTCACGTCACCAAGGACGGCGCCATCGCCGGACCCCGCCTCCTCGAGCACCTCGTGGACGTCGTCCTCTCCTTC
GAAGGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTGAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGCTT
CGAGTTGCACGACGAAGGCATCACCGGACTCGCCGACCCCAGCGGGCTGTTCCTCACCCGCCGCGACGAACCCGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGGCGGCGGCCTCTCGTCGCCGAGGTTCAGGCCCTCACCGTCGACTCCCAGATC
CCGTCCCCTCGGCGCACCACATCCGGCCTGGAGACGTCTCGCGTCTCGATGATGCTCGCCGTCCTCGAGCAGCGCGGGCG
GATCAGTGCCCTGGGAAAGCGGGACATCTACTCCGCGACCGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCATCGCCCTCGCCCTCGCCAGCGCCGCCAGCGACACCCCGCTCCCCAAGAACCTCGTCGCGATCGGTGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTGACCGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACCCACGCCCTCGT
GCCGAGCGATCCGGGCAAGGTGCCCGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCTCTGCGCGTGCTGC
CCAGGAGCCGTCGCCGAGAGGCCCCACGGGAGACGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus mitis SK321

44

90.618

0.399
  radA Streptococcus mitis NCTC 12261

44

90.618

0.399