Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA28_RS03150 Genome accession   NZ_CP108075
Coordinates   667098..667766 (-) Length   222 a.a.
NCBI ID   WP_326708471.1    Uniprot ID   A0ABV4SV17
Organism   Streptomyces sp. NBC_00269     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 662098..672766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA28_RS03120 (OHA28_03130) - 662220..663509 (+) 1290 WP_326708468.1 transporter -
  OHA28_RS03125 (OHA28_03135) - 663546..664550 (+) 1005 WP_326708469.1 twin-arginine translocation signal domain-containing protein -
  OHA28_RS03130 (OHA28_03140) - 664594..665160 (-) 567 Protein_625 oxidoreductase -
  OHA28_RS03135 (OHA28_03145) - 665205..666078 (+) 874 WP_328753853.1 IS5 family transposase -
  OHA28_RS03140 (OHA28_03150) - 666098..666508 (-) 411 Protein_627 SDR family NAD(P)-dependent oxidoreductase -
  OHA28_RS03145 (OHA28_03155) - 666708..666893 (+) 186 Protein_628 deaminase -
  OHA28_RS03150 (OHA28_03160) vraR 667098..667766 (-) 669 WP_326708471.1 response regulator transcription factor Regulator
  OHA28_RS03155 (OHA28_03165) - 667763..669046 (-) 1284 WP_326715783.1 sensor histidine kinase -
  OHA28_RS03160 (OHA28_03170) - 669117..669968 (-) 852 WP_326708472.1 ABC transporter permease -
  OHA28_RS03165 (OHA28_03175) - 669965..670903 (-) 939 WP_326708473.1 ATP-binding cassette domain-containing protein -
  OHA28_RS03170 (OHA28_03180) - 671089..672123 (-) 1035 WP_326708474.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24079.67 Da        Isoelectric Point: 6.6547

>NTDB_id=652702 OHA28_RS03150 WP_326708471.1 667098..667766(-) (vraR) [Streptomyces sp. NBC_00269]
MTTVLVVDDQPLQRYGLRMLLDSVPETEVVGEAAHGADAVRKAAGLRPDVVLMDVRMPGMDGIEATRRIVATGDRSRVLV
MTTFDLDEYVYAALRAGASGFLLKDARPEELLAGIRAVAVGDAVIAPALTRRLLYEFARLVPPHANGSDEEPRLSSLTDR
EREILVAIGKGWTNGEIATRFVLSESTVKTHVGRVLSKIGARDRIQAVIFAYDHGLARPHGG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652702 OHA28_RS03150 WP_326708471.1 667098..667766(-) (vraR) [Streptomyces sp. NBC_00269]
ATGACCACCGTGCTCGTCGTGGACGACCAGCCTCTCCAGCGGTACGGGCTCCGCATGCTCCTCGACTCCGTGCCCGAGAC
AGAGGTGGTCGGCGAGGCCGCGCACGGAGCCGACGCCGTGCGCAAGGCCGCCGGACTCCGCCCCGACGTCGTCCTCATGG
ACGTACGCATGCCGGGCATGGACGGCATCGAGGCCACGCGCCGCATCGTCGCCACGGGCGACCGCTCCCGCGTCCTCGTC
ATGACCACCTTCGACCTCGACGAGTACGTCTACGCGGCTCTGCGCGCCGGAGCCAGCGGCTTCCTCCTCAAGGACGCCCG
CCCCGAGGAACTCCTGGCCGGCATCCGTGCCGTGGCCGTCGGGGACGCGGTGATCGCACCGGCACTCACCCGCCGCCTGC
TGTACGAGTTCGCCCGACTCGTGCCACCCCACGCGAACGGGTCTGACGAGGAGCCGAGGCTGAGTTCCCTCACCGACCGC
GAACGCGAGATCCTCGTCGCCATCGGCAAGGGCTGGACCAACGGCGAGATCGCCACCCGCTTCGTCCTGTCGGAGTCCAC
GGTCAAGACCCATGTCGGCCGCGTCCTGTCCAAGATCGGCGCCCGCGACCGCATCCAGGCGGTGATCTTCGCCTACGACC
ACGGCCTGGCCCGGCCCCATGGGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-211)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

96.847

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

36.364

99.099

0.36