Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS43395 Genome accession   NZ_CP108070
Coordinates   9542634..9543308 (-) Length   224 a.a.
NCBI ID   WP_095851500.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9537634..9548308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS43370 (OG798_43435) - 9538366..9539493 (+) 1128 WP_267063524.1 LLM class flavin-dependent oxidoreductase -
  OG798_RS43375 (OG798_43440) - 9539573..9540388 (-) 816 WP_328758817.1 DUF899 domain-containing protein -
  OG798_RS43380 (OG798_43445) - 9540657..9540956 (+) 300 WP_261686487.1 hypothetical protein -
  OG798_RS43385 (OG798_43450) - 9541112..9541822 (-) 711 WP_267063526.1 alpha/beta hydrolase -
  OG798_RS43390 (OG798_43455) - 9542044..9542412 (+) 369 WP_095851501.1 hypothetical protein -
  OG798_RS43395 (OG798_43460) vraR 9542634..9543308 (-) 675 WP_095851500.1 response regulator transcription factor Regulator
  OG798_RS43400 (OG798_43465) mslH 9543398..9544720 (-) 1323 WP_267063527.1 lasso peptide C-terminal Trp epimerase -
  OG798_RS43405 (OG798_43470) - 9544717..9545448 (-) 732 WP_121414300.1 thioredoxin domain-containing protein -
  OG798_RS43410 (OG798_43475) - 9545454..9545990 (-) 537 WP_220788805.1 MauE/DoxX family redox-associated membrane protein -
  OG798_RS43415 (OG798_43480) - 9546011..9546880 (-) 870 WP_095851496.1 ABC transporter permease -
  OG798_RS43420 (OG798_43485) - 9546877..9547842 (-) 966 WP_267063528.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23986.77 Da        Isoelectric Point: 5.1216

>NTDB_id=652691 OG798_RS43395 WP_095851500.1 9542634..9543308(-) (vraR) [Streptomyces sp. NBC_00271]
MAESVRVLIADDQALLRGSFRVLVDSTPGMEVVGEAGDGATAVRLARELAPDVVLMDLRMPVLDGIAATREICSDETLTG
VRVLALTMFDMDEYVYPALQAGASGFMLKDASPSDLVDGIRVIATGEGVLAPTVTRRVIANFSRRGETPRPAPRLVGLTK
REHEVLVQIANGLSNAEISERLVISMPTVKTHVGSLLAKLHARDRAQLVIIAYESGLAERGMPT

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652691 OG798_RS43395 WP_095851500.1 9542634..9543308(-) (vraR) [Streptomyces sp. NBC_00271]
ATGGCCGAGTCGGTCCGGGTACTGATCGCGGACGACCAGGCACTGCTGCGCGGGAGCTTCCGGGTCCTCGTCGACTCCAC
ACCCGGCATGGAGGTCGTCGGCGAGGCGGGCGACGGCGCCACGGCGGTCCGGCTCGCCCGGGAACTCGCCCCGGACGTCG
TCCTGATGGACCTCCGGATGCCGGTTCTCGACGGCATCGCGGCCACCCGGGAGATCTGCTCCGACGAGACGCTGACCGGT
GTCCGGGTGCTGGCCCTGACCATGTTCGACATGGACGAGTACGTCTACCCGGCCCTCCAGGCGGGCGCCAGCGGCTTCAT
GTTGAAAGACGCCTCGCCGTCCGACCTGGTCGACGGCATCCGGGTCATCGCCACGGGCGAGGGCGTACTGGCCCCGACGG
TCACCCGGCGCGTCATCGCCAACTTCTCCCGGCGCGGCGAGACGCCCCGCCCCGCTCCACGACTCGTCGGTCTCACCAAG
CGGGAGCACGAAGTCCTCGTCCAGATCGCCAACGGCCTGTCCAACGCGGAGATCTCCGAACGTCTGGTCATCAGCATGCC
GACCGTGAAGACCCACGTCGGCAGCCTCCTGGCCAAGCTGCACGCCCGGGACCGCGCACAGCTGGTCATCATCGCGTACG
AGAGCGGCCTGGCCGAGCGGGGAATGCCGACGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.889

96.429

0.375
  degU Bacillus subtilis subsp. subtilis str. 168

36.564

100

0.371