Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BEST7003_RS15455 Genome accession   NZ_AP012496
Coordinates   3085101..3085745 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis BEST7003     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080101..3090745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS15420 (BEST7003_3043) mrpB 3081293..3081724 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  BEST7003_RS15425 (BEST7003_3044) mrpC 3081724..3082065 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BEST7003_RS15430 (BEST7003_3045) mrpD 3082058..3083539 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  BEST7003_RS15435 (BEST7003_3046) mrpE 3083545..3084021 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  BEST7003_RS15440 (BEST7003_3047) mrpF 3084021..3084305 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BEST7003_RS15445 (BEST7003_3048) mnhG 3084289..3084663 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  BEST7003_RS15450 (BEST7003_3049) yuxO 3084702..3085082 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  BEST7003_RS15455 (BEST7003_3050) comA 3085101..3085745 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BEST7003_RS15460 comP 3085826..3088135 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  BEST7003_RS15465 (BEST7003_3053) comX 3088150..3088317 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  BEST7003_RS15470 (BEST7003_3054) comQ 3088305..3089204 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  BEST7003_RS15475 (BEST7003_3055) degQ 3089389..3089529 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BEST7003_RS21935 - 3089751..3089876 (+) 126 WP_003228793.1 hypothetical protein -
  BEST7003_RS15480 (BEST7003_3056) - 3089990..3090358 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=65269 BEST7003_RS15455 WP_003220716.1 3085101..3085745(-) (comA) [Bacillus subtilis BEST7003]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=65269 BEST7003_RS15455 WP_003220716.1 3085101..3085745(-) (comA) [Bacillus subtilis BEST7003]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment