Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   L5465_RS19945 Genome accession   NZ_CP091596
Coordinates   4049055..4049435 (+) Length   126 a.a.
NCBI ID   WP_000836910.1    Uniprot ID   A0AAQ1AB09
Organism   Acinetobacter baumannii strain Nord4-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4044055..4054435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5465_RS19915 (L5465_19915) kdsB 4044958..4045719 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L5465_RS19920 (L5465_19920) - 4045731..4046711 (+) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  L5465_RS19925 (L5465_19925) - 4046723..4047064 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  L5465_RS19930 (L5465_19930) - 4047082..4047855 (+) 774 WP_000497298.1 TatD family hydrolase -
  L5465_RS19935 (L5465_19935) - 4047893..4048501 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  L5465_RS19940 (L5465_19940) - 4048511..4049065 (+) 555 WP_000841379.1 type II secretion system protein -
  L5465_RS19945 (L5465_19945) xcpV 4049055..4049435 (+) 381 WP_000836910.1 type II secretion system minor pseudopilin GspI Machinery gene
  L5465_RS19950 (L5465_19950) xcpW 4049435..4050136 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  L5465_RS19955 (L5465_19955) gspK 4050136..4051095 (+) 960 WP_000301481.1 type II secretion system minor pseudopilin GspK -
  L5465_RS19960 (L5465_19960) - 4051325..4051921 (+) 597 WP_000908450.1 6-pyruvoyl trahydropterin synthase family protein -
  L5465_RS19965 (L5465_19965) ung 4051972..4052685 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  L5465_RS19970 (L5465_19970) - 4052682..4053806 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  L5465_RS19975 (L5465_19975) tadA 4053813..4054315 (+) 503 Protein_3803 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=652674 L5465_RS19945 WP_000836910.1 4049055..4049435(+) (xcpV) [Acinetobacter baumannii strain Nord4-2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=652674 L5465_RS19945 WP_000836910.1 4049055..4049435(+) (xcpV) [Acinetobacter baumannii strain Nord4-2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992