Detailed information NTG0652675

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: L5465_RS19950
• Genome accession: NZ_CP091596
• Coordinates: 4049435..4050136 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain Nord4-2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4044435..4055136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L5465_RS19915 (L5465_19915)	kdsB	4044958..4045719 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
L5465_RS19920 (L5465_19920)	-	4045731..4046711 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
L5465_RS19925 (L5465_19925)	-	4046723..4047064 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
L5465_RS19930 (L5465_19930)	-	4047082..4047855 (+)	774	WP_000497298.1	TatD family hydrolase	-
L5465_RS19935 (L5465_19935)	-	4047893..4048501 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
L5465_RS19940 (L5465_19940)	-	4048511..4049065 (+)	555	WP_000841379.1	type II secretion system protein	-
L5465_RS19945 (L5465_19945)	xcpV	4049055..4049435 (+)	381	WP_000836910.1	type II secretion system minor pseudopilin GspI	Machinery gene
L5465_RS19950 (L5465_19950)	xcpW	4049435..4050136 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
L5465_RS19955 (L5465_19955)	gspK	4050136..4051095 (+)	960	WP_000301481.1	type II secretion system minor pseudopilin GspK	-
L5465_RS19960 (L5465_19960)	-	4051325..4051921 (+)	597	WP_000908450.1	6-pyruvoyl trahydropterin synthase family protein	-
L5465_RS19965 (L5465_19965)	ung	4051972..4052685 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
L5465_RS19970 (L5465_19970)	-	4052682..4053806 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
L5465_RS19975 (L5465_19975)	tadA	4053813..4054315 (+)	503	Protein_3803	tRNA adenosine(34) deaminase TadA	-
L5465_RS19980 (L5465_19980)	-	4054385..4054828 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=652675 L5465_RS19950 WP_000594572.1 4049435..4050136(+) (xcpW) [Acinetobacter baumannii strain Nord4-2]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=652675 L5465_RS19950 WP_000594572.1 4049435..4050136(+) (xcpW) [Acinetobacter baumannii strain Nord4-2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991