Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG798_RS29340 Genome accession   NZ_CP108070
Coordinates   6420419..6421018 (+) Length   199 a.a.
NCBI ID   WP_095853428.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6415419..6426018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS29325 (OG798_29410) - 6417172..6418704 (+) 1533 WP_328757935.1 substrate-binding domain-containing protein -
  OG798_RS29330 (OG798_29415) - 6418963..6419703 (-) 741 WP_097225231.1 SLATT domain-containing protein -
  OG798_RS29335 (OG798_29420) - 6420020..6420361 (+) 342 WP_075033091.1 YbaB/EbfC family nucleoid-associated protein -
  OG798_RS29340 (OG798_29425) recR 6420419..6421018 (+) 600 WP_095853428.1 recombination mediator RecR Machinery gene
  OG798_RS29345 (OG798_29430) - 6421011..6421670 (+) 660 WP_267062454.1 DUF5063 domain-containing protein -
  OG798_RS29350 (OG798_29435) - 6421684..6422580 (-) 897 WP_267062455.1 alpha/beta hydrolase fold domain-containing protein -
  OG798_RS29355 (OG798_29440) - 6422622..6423089 (-) 468 WP_095853425.1 cupin domain-containing protein -
  OG798_RS29360 (OG798_29445) - 6423181..6423702 (+) 522 WP_121415478.1 MarR family transcriptional regulator -
  OG798_RS29365 (OG798_29450) - 6423927..6424634 (-) 708 WP_267063886.1 sulfite exporter TauE/SafE family protein -
  OG798_RS29370 (OG798_29455) - 6424986..6425120 (-) 135 Protein_5805 response regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21854.28 Da        Isoelectric Point: 4.9908

>NTDB_id=652658 OG798_RS29340 WP_095853428.1 6420419..6421018(+) (recR) [Streptomyces sp. NBC_00271]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=652658 OG798_RS29340 WP_095853428.1 6420419..6421018(+) (recR) [Streptomyces sp. NBC_00271]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTGGCGCAGGAGGAACTGTGCAACATCTGCCGCGACCCACGTCGGGATCTGACCGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGGTCGAGCGGACGCGCGAGTTCCGGGGCAAGTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTCCGGATAAGGGAACTCCTCGCCCGTCTCGCCGACGGCA
CGGTCACGGAGCTCATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACACT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457