Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS15650 Genome accession   NZ_CP108070
Coordinates   3339979..3340620 (-) Length   213 a.a.
NCBI ID   WP_095855427.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3334979..3345620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS15620 (OG798_15690) - 3335485..3335991 (+) 507 WP_095855430.1 HNH endonuclease -
  OG798_RS15625 (OG798_15695) - 3336072..3337007 (-) 936 WP_054230569.1 SPFH domain-containing protein -
  OG798_RS15630 (OG798_15700) - 3337139..3337573 (-) 435 WP_328757211.1 NfeD family protein -
  OG798_RS15635 (OG798_15705) - 3337647..3338438 (-) 792 WP_054230572.1 ABC transporter ATP-binding protein -
  OG798_RS15640 (OG798_15710) - 3338560..3339348 (+) 789 WP_095855428.1 hypothetical protein -
  OG798_RS15645 (OG798_15715) - 3339575..3339820 (-) 246 WP_328757212.1 chaplin -
  OG798_RS15650 (OG798_15720) vraR 3339979..3340620 (-) 642 WP_095855427.1 response regulator transcription factor Regulator
  OG798_RS15655 (OG798_15725) - 3340613..3341791 (-) 1179 WP_328757213.1 GAF domain-containing sensor histidine kinase -
  OG798_RS15660 (OG798_15730) - 3341981..3342676 (+) 696 WP_121416566.1 SDR family NAD(P)-dependent oxidoreductase -
  OG798_RS15665 (OG798_15735) - 3342673..3343758 (+) 1086 WP_328757214.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG798_RS15670 (OG798_15740) - 3344059..3344841 (+) 783 WP_095855423.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22853.16 Da        Isoelectric Point: 5.3711

>NTDB_id=652629 OG798_RS15650 WP_095855427.1 3339979..3340620(-) (vraR) [Streptomyces sp. NBC_00271]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGIDALRKLRELANPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGVLLSQEEANSGQGRGGSLTEREREVL
ALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=652629 OG798_RS15650 WP_095855427.1 3339979..3340620(-) (vraR) [Streptomyces sp. NBC_00271]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAAGTGGTCCGCCGGGGCCTGCGCACCTTTCTCGAAGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCGTCCGACGGCGCCGAAGGAGTCGCCCGCGCCGAGGAGCTGAAGCCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCATCGACGCGCTGCGCAAGCTCCGTGAACTCGCCAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTCGTCCCGGCCCTGCGCGCGGGCGCCGCCGGCTATGTCTACAA
GGACGTGGACCCCGACGCCCTCGCCGGAGCCATCCGCTCCGTGCACGCCGGGCACATCCTGCTCCAGCCCGAGGTGGCGG
GCGTCCTGCTGTCCCAGGAGGAGGCCAACTCGGGCCAGGGGAGGGGCGGCTCGCTCACCGAACGGGAGCGCGAAGTGCTC
GCCCTGATCGCGGACGGCCGCTCCAACCGGGAAATCGCACGCGCGCTCGTCCTCTCGGAGAAGACCGTCAAGACGCACGT
CTCGAACATCCTGATGAAGCTCGACCTCGCCGACCGCACACAGGCCGCGCTCTGGGCCGTACGCCATGGGGCGGCGGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.714

98.592

0.451
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394