Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS12350 Genome accession   NZ_CP108070
Coordinates   2613821..2614483 (+) Length   220 a.a.
NCBI ID   WP_121416821.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2608821..2619483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS12325 (OG798_12385) mug 2609877..2610377 (+) 501 WP_267061215.1 G/U mismatch-specific DNA glycosylase -
  OG798_RS12330 (OG798_12390) - 2610387..2610824 (-) 438 WP_267061216.1 hypothetical protein -
  OG798_RS12335 (OG798_12395) - 2610866..2611591 (-) 726 WP_328756977.1 ABC transporter permease subunit -
  OG798_RS12340 (OG798_12400) - 2611588..2612529 (-) 942 WP_121416823.1 ATP-binding cassette domain-containing protein -
  OG798_RS12345 (OG798_12405) - 2612637..2613806 (+) 1170 WP_121416822.1 histidine kinase -
  OG798_RS12350 (OG798_12410) vraR 2613821..2614483 (+) 663 WP_121416821.1 response regulator transcription factor Regulator
  OG798_RS12355 (OG798_12415) - 2614606..2615763 (+) 1158 WP_095855967.1 ROK family transcriptional regulator -
  OG798_RS12360 (OG798_12420) - 2615898..2616659 (-) 762 WP_095855966.1 GntR family transcriptional regulator -
  OG798_RS12365 (OG798_12425) - 2616915..2617799 (-) 885 WP_328756978.1 RNA polymerase sigma-70 factor -
  OG798_RS12370 (OG798_12430) - 2617955..2618785 (+) 831 WP_267061218.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23331.90 Da        Isoelectric Point: 4.8604

>NTDB_id=652622 OG798_RS12350 WP_121416821.1 2613821..2614483(+) (vraR) [Streptomyces sp. NBC_00271]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLMDGIEATRAVLRTVSDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARAAEIVHAVRLVAEGESLLFPASVRQLAAEYGDGGGNPAARAAMERAALTER
EGEVLRLMARGLSNAEIAGRLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVSPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=652622 OG798_RS12350 WP_121416821.1 2613821..2614483(+) (vraR) [Streptomyces sp. NBC_00271]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAACCGCTCGTCCGCGCGGGCCTGCGGGCCGTCCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGAGAGGCGGCCGACGGCGCCGCGGTGATCCCGCTCGTGCGGCGGCTGCGGCCGGACGTCGTCGCCA
TGGACGTCCGCATGCCGCTCATGGACGGCATCGAGGCCACGCGCGCGGTCCTGCGGACCGTGAGCGATCCCCCGAAGATC
CTCGTCGTGACCACGTTCGAGAACGACGAGTACGTCTACGAGGCGCTGCGCGCGGGTGCCGACGGTTTTCTGCTGAAGCG
GGCCAGGGCCGCCGAGATCGTGCACGCCGTGCGGCTCGTCGCGGAGGGCGAGTCGCTGCTGTTCCCGGCGTCCGTGCGGC
AGTTGGCGGCCGAGTACGGGGACGGCGGCGGGAATCCGGCGGCGCGGGCGGCCATGGAGCGGGCCGCGCTGACCGAGCGG
GAGGGGGAGGTGCTGCGGCTGATGGCACGGGGGCTGTCGAACGCGGAGATCGCCGGGCGGCTGATCGTCGGGACCGAGAC
GGTCAAGTCGCACGTCAGCGCCGTACTGGCGAAGCTGGGAGCCCGGGACCGTACGCAGGCGGTCATCGCGGCGTACGAGT
CGGGGTTCGTGTCCCCTGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.818

100

0.418
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.373