Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS10645 Genome accession   NZ_CP108070
Coordinates   2234457..2235122 (-) Length   221 a.a.
NCBI ID   WP_267063772.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2229457..2240122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS10620 (OG798_10685) - 2229643..2230812 (+) 1170 WP_328756863.1 MFS transporter -
  OG798_RS10625 (OG798_10690) - 2231216..2231959 (+) 744 WP_328756865.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG798_RS10630 (OG798_10695) - 2232076..2232486 (-) 411 WP_121416962.1 MarR family transcriptional regulator -
  OG798_RS10635 (OG798_10700) - 2232571..2234094 (+) 1524 WP_095856197.1 MFS transporter -
  OG798_RS10640 (OG798_10705) - 2234218..2234496 (+) 279 WP_095856196.1 DUF6332 family protein -
  OG798_RS10645 (OG798_10710) vraR 2234457..2235122 (-) 666 WP_267063772.1 response regulator transcription factor Regulator
  OG798_RS10650 (OG798_10715) - 2235224..2236480 (-) 1257 WP_267061049.1 sensor histidine kinase -
  OG798_RS10655 (OG798_10720) - 2236594..2237331 (-) 738 WP_121416961.1 TetR/AcrR family transcriptional regulator -
  OG798_RS10660 (OG798_10725) - 2237518..2237967 (+) 450 WP_079089222.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG798_RS10665 (OG798_10730) - 2238086..2239342 (-) 1257 WP_095856193.1 geranylgeranyl reductase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24056.84 Da        Isoelectric Point: 4.9142

>NTDB_id=652619 OG798_RS10645 WP_267063772.1 2234457..2235122(-) (vraR) [Streptomyces sp. NBC_00271]
MIRVLLADDQSLVRAGFKALLDAQADLEVAGEAADGEEAVRKGRELRPDVVLMDIRMPLLDGLAATRRLTDDPDLKDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPDELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPAAAESLLRLTERER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652619 OG798_RS10645 WP_267063772.1 2234457..2235122(-) (vraR) [Streptomyces sp. NBC_00271]
GTGATCCGCGTCCTGCTCGCCGACGACCAGTCACTGGTCAGGGCGGGCTTCAAGGCGCTGCTCGACGCACAGGCGGACCT
GGAGGTGGCCGGTGAGGCGGCCGACGGCGAGGAGGCGGTGCGCAAGGGGCGCGAACTGCGGCCCGACGTCGTCCTGATGG
ACATCCGCATGCCGCTGCTCGACGGCCTCGCCGCGACTCGCCGTCTCACCGACGACCCGGACCTGAAGGACGTGAAGGTG
GTCATGCTCACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGGGCGTCCGGCTTCCTCGTCAAGGA
CACCGAGCCGGACGAACTCCTGCGCGCGGTACGGGCGGTGGTCGGCGGCGACGCGCTGCTGTCACCGGGCGTGACGCGCC
GTCTGATCGCGGAGTTCGCGGCCCGTTCCAAGGAGCCCGCGGCCGCGGAGTCGCTCCTCCGGCTCACCGAGCGGGAGCGG
GAGGTGATGGCCCTGGTCGGTATCGGACTGTCCAACGACGAGATCGCGCGGCGTCTGGTCGTCAGCCCGCTCACGGCCAA
GACCCATGTCAGTCGCACGATGGTGAAGCTCGGCGCCCGTGATCGGGCCCAACTGGTCGTGCTGGCCTATGAGTCGGGGT
TGGTGCGGCCGGGGTGGCTCGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

97.285

0.371
  degU Bacillus subtilis subsp. subtilis str. 168

36.444

100

0.371