Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG827_RS35165 Genome accession   NZ_CP108068
Coordinates   7611136..7611816 (-) Length   226 a.a.
NCBI ID   WP_327280104.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7606136..7616816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS35145 (OG827_35170) - 7606360..7608204 (-) 1845 WP_327280099.1 GNAT family N-acetyltransferase -
  OG827_RS35150 (OG827_35175) - 7608318..7608740 (+) 423 WP_327280100.1 DUF350 domain-containing protein -
  OG827_RS35155 (OG827_35180) - 7608762..7609973 (-) 1212 WP_328764645.1 acyltransferase -
  OG827_RS35160 (OG827_35185) - 7609970..7611013 (-) 1044 WP_328764646.1 alpha/beta hydrolase -
  OG827_RS35165 (OG827_35190) vraR 7611136..7611816 (-) 681 WP_327280104.1 response regulator transcription factor Regulator
  OG827_RS35170 (OG827_35195) - 7611813..7613099 (-) 1287 WP_328765294.1 histidine kinase -
  OG827_RS35175 (OG827_35200) - 7613247..7614194 (+) 948 WP_327280105.1 AEC family transporter -
  OG827_RS35180 (OG827_35205) - 7614191..7614733 (+) 543 WP_327280106.1 HXXEE domain-containing protein -
  OG827_RS35185 (OG827_35210) - 7614799..7615194 (+) 396 WP_327280107.1 hypothetical protein -
  OG827_RS35190 (OG827_35215) - 7615148..7616113 (-) 966 WP_327280108.1 serine protease -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24288.14 Da        Isoelectric Point: 5.6980

>NTDB_id=652601 OG827_RS35165 WP_327280104.1 7611136..7611816(-) (vraR) [Streptomyces sp. NBC_00272]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVQVSRTVHPDVVLMDVRMPEMDGLTAARELLGPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=652601 OG827_RS35165 WP_327280104.1 7611136..7611816(-) (vraR) [Streptomyces sp. NBC_00272]
TTGACCATCCGTGTGATCATCGTCGACGACCAGGCCATGGTACGGGCGGGGTTCGCCGCCCTCCTGTCGGCGCAGGCCGA
CATCGACGTGGTGGGCGAGGCCCCCGACGGCCGGCAGGGGGTACAGGTCTCGCGCACCGTGCATCCCGACGTGGTGCTGA
TGGACGTGCGCATGCCGGAGATGGACGGACTGACGGCGGCCCGGGAGCTGCTCGGCCCGCCGCCGGGGGTCGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCCTCCGGGTTCCT
ACTGAAGGACGCGCCGCCCGCCGACCTGATCGCGGCGGTCCGGGTGGTCGCGTCCGGCGAGGCCCTGCTGGCGCCCTCGG
TGACCCGGCGGCTGATCGCGGACTTCGTCCAGCAGCGGCCGGCGCCGCGCAAGGACCCGGCGCTGCGGCTGAACGGGCTG
ACCCCGCGGGAGACCGAGGTACTGGAACTGATCGCGCGCGGGCTGTCGAACCAGGAGATCGCCGGGCACCTGGTGCTGGC
GGAGCAGACCGTCAAGACGCACATCGGGCGGGTGCTGGCCAAGCTGGACCTGCGCGACCGGGCCCAAGCGGTGATCTTCG
CCTACGAGGCGGGCCTCGTCCGCCCGGGCGATTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.629

97.788

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.376