Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG827_RS27370 Genome accession   NZ_CP108068
Coordinates   5802949..5803656 (-) Length   235 a.a.
NCBI ID   WP_327278808.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5797949..5808656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS27350 (OG827_27360) - 5798280..5799719 (+) 1440 WP_327278804.1 gamma-aminobutyraldehyde dehydrogenase -
  OG827_RS27355 (OG827_27365) - 5799824..5801002 (+) 1179 WP_327278805.1 spermidine/putrescine ABC transporter substrate-binding protein -
  OG827_RS27360 (OG827_27370) - 5801100..5801600 (+) 501 WP_328763868.1 hypothetical protein -
  OG827_RS27365 (OG827_27375) - 5801567..5802802 (-) 1236 WP_328763870.1 serine hydrolase domain-containing protein -
  OG827_RS27370 (OG827_27380) vraR 5802949..5803656 (-) 708 WP_327278808.1 response regulator transcription factor Regulator
  OG827_RS27375 (OG827_27385) - 5803653..5804873 (-) 1221 WP_328763872.1 histidine kinase -
  OG827_RS27380 (OG827_27390) - 5804873..5805580 (-) 708 WP_327278810.1 glycerophosphodiester phosphodiesterase -
  OG827_RS27385 (OG827_27395) - 5805603..5806628 (-) 1026 WP_327278811.1 adenosine deaminase -
  OG827_RS27390 (OG827_27400) - 5806739..5807416 (+) 678 WP_327278812.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24631.13 Da        Isoelectric Point: 4.9844

>NTDB_id=652589 OG827_RS27370 WP_327278808.1 5802949..5803656(-) (vraR) [Streptomyces sp. NBC_00272]
MTIRVVVADDQELVRSGFAMILDVQEDIEVVAEVGDGAAAVAAVRELRPDVALLDVRMPVLDGIEACRTISAGTSCRTVI
LTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPSVARRLIEEYTAATARPAGALSAQRLEVLTARE
RETLLHLGRGLSNAEIAGALVVSEHTVKSHVGHVLAKLGLRDRIQAVICAYETGLIAAGTGAAGAAGSGVSPSRE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=652589 OG827_RS27370 WP_327278808.1 5802949..5803656(-) (vraR) [Streptomyces sp. NBC_00272]
TTGACGATCCGTGTGGTGGTGGCGGACGACCAGGAACTAGTGCGCAGCGGGTTCGCGATGATCCTGGACGTGCAGGAGGA
CATCGAGGTCGTCGCGGAGGTGGGGGACGGGGCGGCGGCGGTGGCCGCGGTGCGGGAGCTGCGGCCGGACGTGGCGCTGC
TGGACGTCCGGATGCCGGTGCTCGACGGGATCGAGGCGTGCCGGACGATCTCGGCCGGGACCTCGTGCCGGACGGTGATC
CTGACGACCTTCGACTCGGACGAGTACGTGTACGAGGCGCTGCACGCGGGGGCGAGCGGGTTCCTGCTGAAGGACGTGCG
GCGGGACGATCTGGTGCATGCCGTACGGGTGGTGGCGGCGGGCGAGTCACTGCTGGCGCCTTCGGTGGCGCGGCGGCTGA
TCGAGGAGTACACGGCGGCTACGGCGCGGCCGGCGGGGGCGCTGTCGGCGCAGCGGCTGGAGGTACTGACGGCGCGGGAG
CGGGAGACGCTTCTGCACCTGGGGCGGGGGCTGTCGAACGCGGAGATCGCGGGCGCGCTGGTGGTGAGCGAGCACACGGT
GAAGTCCCATGTGGGCCATGTGCTGGCGAAGCTCGGGCTGCGGGACCGGATCCAGGCGGTGATCTGCGCGTACGAGACGG
GTCTCATCGCGGCCGGGACGGGGGCCGCGGGCGCGGCCGGCTCTGGGGTATCTCCCTCCCGGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.553

92.34

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

94.894

0.362