Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG386_RS35770 Genome accession   NZ_CP108067
Coordinates   7990160..7990810 (-) Length   216 a.a.
NCBI ID   WP_266599050.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7985160..7995810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS35755 (OG386_35760) - 7986870..7987721 (-) 852 WP_328791514.1 alpha/beta fold hydrolase -
  OG386_RS35760 (OG386_35765) - 7988010..7988780 (+) 771 WP_328791515.1 GntR family transcriptional regulator -
  OG386_RS35765 (OG386_35770) - 7988905..7990059 (-) 1155 WP_328791516.1 ROK family transcriptional regulator -
  OG386_RS35770 (OG386_35775) vraR 7990160..7990810 (-) 651 WP_266599050.1 response regulator transcription factor Regulator
  OG386_RS35775 (OG386_35780) - 7990815..7991990 (-) 1176 WP_328791517.1 histidine kinase -
  OG386_RS35780 (OG386_35785) - 7992099..7993010 (+) 912 WP_328791518.1 ATP-binding cassette domain-containing protein -
  OG386_RS35785 (OG386_35790) - 7993048..7993797 (+) 750 WP_328791519.1 ABC transporter permease -
  OG386_RS35790 (OG386_35795) - 7993838..7994275 (+) 438 WP_328791520.1 hypothetical protein -
  OG386_RS35795 (OG386_35800) - 7994259..7994678 (-) 420 WP_328791521.1 mismatch-specific DNA-glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23240.88 Da        Isoelectric Point: 4.8482

>NTDB_id=652514 OG386_RS35770 WP_266599050.1 7990160..7990810(-) (vraR) [Streptomyces sp. NBC_00273]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGASVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDSPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRQARATLERAALTEREEAV
LRLMARGLTNVEIAAELIIGTETVKSHVSAILAKLGARDRTQAVITAYESGFVSPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=652514 OG386_RS35770 WP_266599050.1 7990160..7990810(-) (vraR) [Streptomyces sp. NBC_00273]
ATGCCGGTTACCGTACTGCTCGTCGACGACGAACCCCTGGTGCGTGCGGGTCTGCGCGCCGTCCTGGAGGCCCAGCCCGA
CATCGAGGTGGTGGGTGAGGCGGCCGATGGGGCCTCCGTGATCCCGCTGGTCCGACAGTTGCGGCCGGATGTGGTGGCGA
TGGACGTGCGGATGCCGCTCCTCGACGGGATCGAGGCGACCCGTGCGGTGCTGCGGACGGTGGACTCCCCTCCGAAGATC
CTCGTGGTGACCACCTTCGAGAACGACGAGTACGTCTACCAGGCGCTGCGGGCGGGAGCGGACGGGTTCCTGCTGAAGCG
GGCCCGGCCTTCGGAGATCGTGCACGCGGTACGGCTGGTGGCGGAGGGCGAGACGCTGCTCTTCCCGGCGGCCGTGCGGG
CCCTGGCGGCGGAGTACGGCAACCGGCAGGCCAGGGCGACGCTGGAGCGGGCCGCCCTGACCGAGCGGGAGGAGGCGGTG
CTGCGGCTGATGGCGCGGGGGCTCACGAACGTGGAGATCGCCGCCGAGTTGATCATCGGCACGGAGACGGTCAAGTCCCA
CGTCAGCGCGATCCTGGCCAAGCTGGGGGCGCGGGACCGGACGCAGGCGGTGATCACGGCGTACGAGTCGGGGTTCGTCT
CGCCCGCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.589

99.074

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366