Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG386_RS24375 Genome accession   NZ_CP108067
Coordinates   5522831..5523451 (-) Length   206 a.a.
NCBI ID   WP_030009243.1    Uniprot ID   A0ABQ3TG34
Organism   Streptomyces sp. NBC_00273     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5517831..5528451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS24350 (OG386_24365) - 5518649..5519131 (+) 483 WP_328789870.1 GNAT family N-acetyltransferase -
  OG386_RS24355 (OG386_24370) - 5519154..5520146 (-) 993 WP_328793336.1 zinc-binding dehydrogenase -
  OG386_RS24360 (OG386_24375) - 5520232..5520906 (+) 675 WP_328789871.1 pentapeptide repeat-containing protein -
  OG386_RS24365 (OG386_24380) - 5521143..5522228 (+) 1086 WP_328789872.1 glycosyl hydrolase -
  OG386_RS24370 (OG386_24385) - 5522261..5522764 (-) 504 WP_328793337.1 hypothetical protein -
  OG386_RS24375 (OG386_24390) vraR 5522831..5523451 (-) 621 WP_030009243.1 response regulator transcription factor Regulator
  OG386_RS24380 (OG386_24395) - 5523448..5524647 (-) 1200 WP_328789873.1 sensor histidine kinase -
  OG386_RS24385 (OG386_24400) - 5524985..5525551 (+) 567 WP_328789874.1 heme-binding protein -
  OG386_RS24390 (OG386_24405) - 5525584..5526996 (+) 1413 WP_328789875.1 M1 family metallopeptidase -
  OG386_RS24395 (OG386_24410) - 5527093..5527611 (-) 519 WP_328789876.1 GNAT family N-acetyltransferase -
  OG386_RS24400 (OG386_24415) - 5527701..5528276 (-) 576 WP_030009238.1 TerD family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21854.15 Da        Isoelectric Point: 5.9370

>NTDB_id=652487 OG386_RS24375 WP_030009243.1 5522831..5523451(-) (vraR) [Streptomyces sp. NBC_00273]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLHPDVVLMDLQLGEGIDGVEATRRITALPRPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIHSAAQGRTTLSAPVASRVMAHMRGTRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 621 bp        

>NTDB_id=652487 OG386_RS24375 WP_030009243.1 5522831..5523451(-) (vraR) [Streptomyces sp. NBC_00273]
ATGACCACGATCCTCCTCTGCGACGACCACGTGGTGGTCCGCGCCGGACTCCTGGCCCTGCTCGGCAGCGAGCCCGACAT
CGAGGTCCTCGGCGAGGCGGGCAGCGGCGAGGAGGCCGTCGCCCTCGCCGCGAAGCTCCACCCCGACGTGGTCCTGATGG
ACCTCCAGCTGGGCGAGGGCATCGACGGCGTCGAGGCGACCCGCCGGATCACGGCGCTCCCCCGGCCCCCGCACGTACTG
GTCCTCACCACCTACGACACCGACGCGGACATCACCCGCGCGATCGGCGCCGGCGCCACCGGCTACCTCCTCAAGGCCGA
GCGCCCGGAGGAACTCTTCGCCGCGATCCACTCCGCGGCCCAGGGCCGCACCACCCTGTCCGCACCGGTGGCCAGCCGGG
TCATGGCCCACATGCGCGGCACCCGCCCCACCCTGACCGACCGCGAACTCGACATCCTCGGCCAGCTGGCCCGGGGCCTG
GGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACCGTCAAGACCCACCTGGGCCGCATCTACGACAAACT
CGGCGTCGACACCCGCGCCGGCGCGGTCTCCGTGGCCAAGGAACAGCGCCTCCTGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(144-199)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.32

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

35.484

100

0.374