Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG386_RS21155 Genome accession   NZ_CP108067
Coordinates   4869921..4870520 (-) Length   199 a.a.
NCBI ID   WP_030010802.1    Uniprot ID   A0ABS4LCH5
Organism   Streptomyces sp. NBC_00273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4864921..4875520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS21135 (OG386_21140) - 4865871..4866593 (-) 723 WP_328793307.1 SigE family RNA polymerase sigma factor -
  OG386_RS21140 (OG386_21145) - 4866807..4867880 (-) 1074 WP_328789449.1 aspartate-semialdehyde dehydrogenase -
  OG386_RS21145 (OG386_21150) - 4867877..4869151 (-) 1275 WP_030726444.1 aspartate kinase -
  OG386_RS21150 (OG386_21155) - 4869281..4869928 (-) 648 WP_266594517.1 DUF5063 domain-containing protein -
  OG386_RS21155 (OG386_21160) recR 4869921..4870520 (-) 600 WP_030010802.1 recombination mediator RecR Machinery gene
  OG386_RS21160 (OG386_21165) - 4870555..4870899 (-) 345 WP_094744798.1 YbaB/EbfC family nucleoid-associated protein -
  OG386_RS21165 (OG386_21170) - 4871169..4871915 (+) 747 WP_328789450.1 SLATT domain-containing protein -
  OG386_RS21170 (OG386_21175) - 4871995..4872645 (-) 651 WP_328789451.1 hypothetical protein -
  OG386_RS21175 (OG386_21180) - 4872732..4873397 (-) 666 WP_328789452.1 GntR family transcriptional regulator -
  OG386_RS21180 (OG386_21185) - 4873563..4874924 (-) 1362 WP_328789453.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21843.18 Da        Isoelectric Point: 5.0142

>NTDB_id=652479 OG386_RS21155 WP_030010802.1 4869921..4870520(-) (recR) [Streptomyces sp. NBC_00273]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=652479 OG386_RS21155 WP_030010802.1 4869921..4870520(-) (recR) [Streptomyces sp. NBC_00273]
TTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCACAGGAGGAGCGGTGCGGCATCTGCCGCGACCCGCGCCGGGACACCACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACGCGCGAGTTCCGGGGGAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGTGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGACTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472