Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG386_RS20410 Genome accession   NZ_CP108067
Coordinates   4715891..4717303 (+) Length   470 a.a.
NCBI ID   WP_327383940.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4710891..4722303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS20395 (OG386_20400) - 4711650..4712588 (-) 939 WP_327383937.1 Ppx/GppA phosphatase family protein -
  OG386_RS20400 (OG386_20405) - 4712652..4713524 (+) 873 WP_328789346.1 hypothetical protein -
  OG386_RS20405 (OG386_20410) - 4713629..4715398 (-) 1770 WP_328789347.1 hypothetical protein -
  OG386_RS20410 (OG386_20415) radA/sms 4715891..4717303 (+) 1413 WP_327383940.1 DNA repair protein RadA Machinery gene
  OG386_RS20415 (OG386_20420) disA 4717567..4718691 (+) 1125 WP_266603467.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG386_RS20420 (OG386_20425) - 4718893..4719711 (-) 819 WP_328789348.1 hypothetical protein -
  OG386_RS20425 (OG386_20430) - 4719872..4720498 (+) 627 WP_328789349.1 phosphatase PAP2 family protein -
  OG386_RS20430 (OG386_20435) - 4720522..4721499 (+) 978 WP_328789350.1 A/G-specific adenine glycosylase -
  OG386_RS20435 (OG386_20440) - 4721684..4722244 (+) 561 WP_327383944.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49248.46 Da        Isoelectric Point: 8.0042

>NTDB_id=652474 OG386_RS20410 WP_327383940.1 4715891..4717303(+) (radA/sms) [Streptomyces sp. NBC_00273]
MAARTARSSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKERSAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=652474 OG386_RS20410 WP_327383940.1 4715891..4717303(+) (radA/sms) [Streptomyces sp. NBC_00273]
ATGGCTGCCCGCACCGCTCGTTCATCCGCAAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCGAA
GTGGCTCGGCCGCTGTCCCGAATGCCAGGCCTGGGGCACCGTCGAGGAAATGGGCGCGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTCTCGACCGCCGCCCTGCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTGCTGCTCGCCGGCGAGCCCGGCGTCGGCAAGTC
GACCCTGCTGCTGGACGTCGCGGCGAAGGCGGCCAGTGACGAGCACCGCACGCTGTACGTGACGGGCGAGGAGTCGGCCA
GCCAGGTGCGCCTGCGGGCCGACCGGATCAACGCCCTCAGCGATCACCTCTACCTCGCCGCCGAAACCGACCTGTCCGCC
GTCCTCGGCCATCTCGACGCCGTGAAGCCGTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGTGCGCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGAGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCA
CCCTCCTCGTCGGCCACGTGACCAAGGACGGAGCCATCGCCGGTCCCCGACTGCTGGAGCACCTCGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGACTCGCCGATCCGAGCGGGCTGTTCCTGACCCGGCGGGCCGAGGCCG
TTCCGGGCACCTGCCTGACGGTGACCCTGGAGGGGAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCC
CAGATCCCCTCCCCCCGGCGCACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTCACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCCGCCGCCAGTGACGTCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACCGGCGTTCAGCGGCGGCTCGCGGAGGCGCACCGACTGGGATTCACGCACGC
GCTGGTTCCGGCGGATCCGGGGAAGGTACCGGCGGGGATGAAGGTCATCGAGGTGGCCGACATGGGCGACGCGCTACGGG
TGTTGCCGCGCGGCCGCTCCCGTACGCCGGCCAAGGAGCGGTCCGCGGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus mitis SK321

43.077

96.809

0.417
  radA Streptococcus mitis NCTC 12261

43.077

96.809

0.417
  radA Streptococcus pneumoniae Rx1

43.142

96.17

0.415
  radA Streptococcus pneumoniae TIGR4

43.142

96.17

0.415
  radA Streptococcus pneumoniae D39

43.142

96.17

0.415
  radA Streptococcus pneumoniae R6

43.142

96.17

0.415