Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG386_RS02345 Genome accession   NZ_CP108067
Coordinates   629264..629896 (+) Length   210 a.a.
NCBI ID   WP_328786500.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 624264..634896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS02325 (OG386_02315) - 625189..626739 (-) 1551 WP_328786496.1 PH domain-containing protein -
  OG386_RS02330 (OG386_02320) - 626736..627236 (-) 501 WP_328786497.1 PH domain-containing protein -
  OG386_RS02335 (OG386_02325) - 627290..627805 (-) 516 WP_328786498.1 hypothetical protein -
  OG386_RS02340 (OG386_02330) - 627973..629271 (+) 1299 WP_328786499.1 sensor histidine kinase -
  OG386_RS02345 (OG386_02335) vraR 629264..629896 (+) 633 WP_328786500.1 response regulator transcription factor Regulator
  OG386_RS02350 (OG386_02340) - 629949..632852 (-) 2904 WP_328786501.1 AAA family ATPase -
  OG386_RS02355 (OG386_02345) - 633058..633822 (-) 765 WP_328786502.1 alpha/beta fold hydrolase -
  OG386_RS02360 (OG386_02350) - 633972..634103 (-) 132 WP_328786503.1 hypothetical protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22630.16 Da        Isoelectric Point: 6.2739

>NTDB_id=652436 OG386_RS02345 WP_328786500.1 629264..629896(+) (vraR) [Streptomyces sp. NBC_00273]
MSEREPIGVLLADDHPVVREGLSAMLELDEGIRVVGQAGSGEEAVLQAARLKPDIVLLDLRMGAMDGVAATGHILRESPR
SRVVIVTTYEDDADILRAVEAGAAGYLLKGSSREELVQAVKAAARGETVLTPSLAPKLFRARVVEAPVLSEREREVLQLV
RQGMTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVMAALERGLLS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=652436 OG386_RS02345 WP_328786500.1 629264..629896(+) (vraR) [Streptomyces sp. NBC_00273]
ATGAGTGAGCGCGAACCGATCGGGGTGCTGCTCGCCGATGACCACCCGGTGGTCCGGGAGGGCCTGAGCGCCATGCTGGA
GCTGGACGAGGGCATCCGGGTGGTGGGACAGGCCGGTTCCGGTGAGGAGGCGGTGCTGCAGGCCGCACGGCTGAAGCCGG
ACATCGTCCTGCTCGACCTGCGGATGGGCGCGATGGACGGGGTGGCCGCGACCGGGCACATCCTGCGGGAGTCGCCGCGC
AGCCGGGTGGTCATCGTGACCACGTACGAGGACGACGCGGACATCCTGCGCGCGGTGGAGGCGGGCGCCGCGGGCTACCT
GCTCAAGGGCAGCTCCCGCGAGGAGCTGGTGCAGGCGGTGAAGGCGGCGGCGCGCGGTGAGACGGTGCTGACGCCGTCGC
TGGCGCCGAAGCTGTTCCGGGCCCGGGTGGTGGAGGCGCCGGTGCTGTCCGAGCGGGAGCGCGAAGTGCTCCAGTTGGTC
AGGCAGGGCATGACCAACGCGGACATCGGGCGCCGGCTGTTCATCAGCGAGGCAACGGTCAAGACGCACCTGCTGCGGTC
GTTCAAGAAGCTGTCGGTGTCGGACCGCACGGCGGCGGTGATGGCGGCCCTGGAACGGGGCCTGCTGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.806

98.095

0.39
  degU Bacillus subtilis subsp. subtilis str. 168

34.081

100

0.362