Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG386_RS01095 Genome accession   NZ_CP108067
Coordinates   249676..250377 (-) Length   233 a.a.
NCBI ID   WP_328786309.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 244676..255377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS01070 (OG386_01065) - 245317..245634 (+) 318 WP_328786305.1 hypothetical protein -
  OG386_RS01075 (OG386_01070) - 245885..247561 (+) 1677 WP_328786306.1 ISL3 family transposase -
  OG386_RS01080 (OG386_01075) - 247450..247863 (-) 414 WP_328786307.1 hypothetical protein -
  OG386_RS01085 (OG386_01080) - 247948..248115 (+) 168 Protein_216 IS5/IS1182 family transposase -
  OG386_RS01090 (OG386_01085) - 248225..249439 (-) 1215 WP_328786308.1 alpha/beta hydrolase -
  OG386_RS01095 (OG386_01090) vraR 249676..250377 (-) 702 WP_328786309.1 response regulator transcription factor Regulator
  OG386_RS01100 (OG386_01095) - 250374..251741 (-) 1368 WP_328786310.1 histidine kinase -
  OG386_RS01105 (OG386_01100) - 252141..253652 (+) 1512 WP_328786311.1 hypothetical protein -
  OG386_RS01110 (OG386_01105) - 253646..254272 (+) 627 WP_328786312.1 hypothetical protein -
  OG386_RS01115 (OG386_01110) - 254653..255006 (-) 354 Protein_222 cation transporter -
  OG386_RS01120 - 255014..255154 (-) 141 Protein_223 IS1380 family transposase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 24795.48 Da        Isoelectric Point: 4.8230

>NTDB_id=652434 OG386_RS01095 WP_328786309.1 249676..250377(-) (vraR) [Streptomyces sp. NBC_00273]
MTIRVLIADDQAMVRDAFSVLLGAQPDIEVVATAEDGTHAVARSAELAPDVIVMDIRMPGLDGIEATRQITSTPGTSAKI
LILTTFNLDEYVYEALRAGASGFLLKDASGIQLAEAVRVVARGEALLAPDITMRLIAEFSRVSPGAKRPTGVRIDALTDR
ETEVLAQVAQGLSNAEIAQVLVVAEETVKTHVGRILRKLQLRDRTQAAVFAYESGLVAPGDGARWAPSLRAAP

Nucleotide


Download         Length: 702 bp        

>NTDB_id=652434 OG386_RS01095 WP_328786309.1 249676..250377(-) (vraR) [Streptomyces sp. NBC_00273]
ATGACCATCCGCGTGCTCATCGCCGACGACCAGGCCATGGTCCGGGACGCCTTCTCCGTCCTGCTCGGTGCCCAGCCCGA
CATCGAGGTCGTTGCCACCGCCGAGGACGGCACGCACGCCGTCGCCCGGTCCGCGGAACTGGCACCCGACGTGATCGTGA
TGGACATCCGGATGCCCGGCCTGGACGGCATCGAGGCCACCCGCCAGATCACGTCGACGCCCGGAACATCAGCGAAGATC
CTCATCCTGACCACCTTCAACCTCGACGAGTACGTCTACGAGGCACTGCGCGCCGGGGCCTCCGGATTTCTGCTCAAGGA
CGCCTCCGGCATCCAGCTCGCGGAAGCCGTAAGGGTGGTGGCCCGGGGCGAGGCTCTACTTGCACCCGACATCACCATGC
GGCTCATCGCCGAGTTCTCCCGCGTGAGTCCTGGTGCCAAGCGGCCGACCGGCGTGCGTATCGATGCCCTTACCGACCGC
GAGACCGAAGTTCTCGCACAGGTGGCACAGGGCCTCTCCAACGCGGAGATCGCCCAGGTGCTGGTCGTCGCCGAGGAGAC
GGTCAAGACTCACGTGGGCCGCATCCTGCGGAAGCTGCAGCTGCGCGATCGCACCCAGGCCGCCGTCTTCGCCTACGAAT
CCGGCCTGGTCGCCCCCGGCGACGGTGCCCGCTGGGCACCGTCGCTTCGGGCCGCCCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.202

93.562

0.395
  degU Bacillus subtilis subsp. subtilis str. 168

39.474

97.854

0.386