Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG960_RS35380 Genome accession   NZ_CP108059
Coordinates   7945576..7946259 (+) Length   227 a.a.
NCBI ID   WP_371662983.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7940576..7951259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS35360 (OG960_35405) - 7940860..7941090 (-) 231 WP_055532400.1 hypothetical protein -
  OG960_RS35365 (OG960_35410) - 7941542..7943662 (+) 2121 WP_371662981.1 type IIA DNA topoisomerase subunit B -
  OG960_RS35370 (OG960_35415) - 7943868..7944431 (+) 564 WP_371749144.1 DUF1453 domain-containing protein -
  OG960_RS35375 (OG960_35420) - 7944428..7945579 (+) 1152 WP_371662982.1 sensor histidine kinase -
  OG960_RS35380 (OG960_35425) vraR 7945576..7946259 (+) 684 WP_371662983.1 response regulator Regulator
  OG960_RS35385 (OG960_35430) - 7946329..7946895 (+) 567 WP_371662984.1 DUF485 domain-containing protein -
  OG960_RS35390 (OG960_35435) - 7946892..7948484 (+) 1593 WP_371662985.1 cation acetate symporter -
  OG960_RS35395 (OG960_35440) - 7948543..7949235 (-) 693 WP_371662986.1 response regulator -
  OG960_RS35400 (OG960_35445) - 7949449..7950129 (-) 681 WP_371662987.1 response regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24261.74 Da        Isoelectric Point: 5.7330

>NTDB_id=652413 OG960_RS35380 WP_371662983.1 7945576..7946259(+) (vraR) [Streptomyces sp. NBC_00280]
MTREAGPKTARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVRLAGELAPDVVLMDLRMPRCDGVEATRRIRAE
YPGTQVVVLTTFADDESLFRALKAGARGYLTKDADGDEIVRAVHSVLSGDAGLAPSIQRRLLERLTEPEKKPAAPAEPPD
GLTTRETEVLVLIADGLSNQEIAHQLHVSTATVKTHINNLFAKTGIKDRAQAVRYAYGRGLVRPPTG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=652413 OG960_RS35380 WP_371662983.1 7945576..7946259(+) (vraR) [Streptomyces sp. NBC_00280]
ATGACGCGGGAGGCCGGCCCGAAGACCGCGCGGGTCGTGGTCGCGGACGACCAGACCGTCGTACGGGAAGGCATCGTGAT
GCTGCTCGGGCTGCTGCCCGGCATCGAGGTCGTCGGAGCGGCCGGAGACGGGGACGAGGCCGTGAGGCTCGCCGGTGAAC
TCGCGCCGGACGTGGTGCTGATGGATCTGCGCATGCCGCGGTGCGACGGTGTCGAGGCGACCCGGCGGATCAGGGCGGAG
TACCCCGGGACGCAGGTCGTGGTGCTCACGACGTTCGCGGACGACGAGTCGCTGTTCCGTGCGCTGAAGGCAGGCGCGCG
CGGCTATCTCACCAAGGACGCGGACGGTGACGAGATCGTCCGAGCGGTACACAGCGTGCTGTCCGGGGACGCGGGGCTGG
CGCCGAGCATCCAGCGGCGGCTCCTGGAGCGGCTGACGGAGCCGGAGAAGAAGCCTGCCGCGCCCGCCGAGCCGCCCGAC
GGGCTCACCACGAGGGAGACCGAGGTGCTGGTGCTGATCGCGGACGGCCTCAGCAACCAGGAGATCGCGCACCAACTGCA
TGTCTCCACAGCGACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACGGGAATCAAGGACCGTGCGCAGGCGGTGC
GTTACGCCTACGGCAGGGGGTTGGTGCGGCCTCCAACGGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.465

94.714

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

38.288

97.797

0.374