Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG960_RS20290 Genome accession   NZ_CP108059
Coordinates   4609826..4611235 (+) Length   469 a.a.
NCBI ID   WP_371660587.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4604826..4616235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS20270 (OG960_20320) - 4604868..4605707 (-) 840 WP_371660583.1 sugar phosphate isomerase/epimerase family protein -
  OG960_RS20275 (OG960_20325) - 4605895..4606839 (-) 945 WP_371660584.1 Ppx/GppA family phosphatase -
  OG960_RS20280 (OG960_20330) - 4606923..4607789 (+) 867 WP_371660585.1 hypothetical protein -
  OG960_RS20285 (OG960_20335) - 4607806..4609608 (-) 1803 WP_371660586.1 hypothetical protein -
  OG960_RS20290 (OG960_20340) radA/sms 4609826..4611235 (+) 1410 WP_371660587.1 DNA repair protein RadA Machinery gene
  OG960_RS20295 (OG960_20345) disA 4611317..4612441 (+) 1125 WP_327695548.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG960_RS20300 (OG960_20350) - 4612548..4613396 (-) 849 WP_371660588.1 hypothetical protein -
  OG960_RS20305 (OG960_20355) - 4613781..4614722 (+) 942 WP_371660589.1 A/G-specific adenine glycosylase -
  OG960_RS20310 (OG960_20360) - 4615018..4615560 (+) 543 WP_006374267.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49791.98 Da        Isoelectric Point: 8.0047

>NTDB_id=652373 OG960_RS20290 WP_371660587.1 4609826..4611235(+) (radA/sms) [Streptomyces sp. NBC_00280]
MAVRTKTAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDVRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYITGEESASQVRLRADRIRAIDDHLFLAAETDLAAVL
GHLEAVKPSLLILDSVQTVASPEIDGAAGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVVEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADMGDALRVLPRSRRREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652373 OG960_RS20290 WP_371660587.1 4609826..4611235(+) (radA/sms) [Streptomyces sp. NBC_00280]
ATGGCTGTTCGCACGAAGACCGCTAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GGGTCACCACCTCCGCGGTCCCCATCGGCCAGGTCGACGTCCGCCAGGCCACCGCCCGCAGCACCGGCGTGCCCGAACTG
GACCGCGTACTGGGCGGCGGGCTGGTCCCCGGTGCCGTGGTTCTCGTGGCCGGTGAGCCGGGCGTGGGCAAGTCGACGCT
CCTCCTGGACGTCGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAGGGCGATCGACGACCACCTGTTCCTGGCCGCGGAGACGGACCTCGCGGCGGTGCTG
GGTCACCTGGAAGCCGTGAAACCGTCCCTCCTGATCCTCGACTCCGTCCAGACGGTGGCCTCGCCGGAGATCGACGGCGC
CGCGGGCGGCATGGCCCAGGTGCGCGAGGTCGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTCCTGGAACACCTGGTGGACGTGGTCCTGTCCTTC
GAGGGCGACCGGCACGCCCGCCTCCGGCTCGTCCGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGGCGCGCCGAGCCGGTGCCGG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTCGTCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCAGGCGGACGACATCGGGCCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTTCTCGAACAACGGGGCAG
GATCAGCGCACTCGGAAAGCGGGACATCTATTCGGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCGGACCTCG
CAATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAAAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTGACGGGGGTGCAGCGCCGGCTGTCCGAGGCCCACCGTCTGGGCTTCACCCACGCCCTCGT
TCCCTCGGACCCCGGCAAGATCCCCGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGGGACGCGCTCCGGGTGCTTC
CGAGGTCGCGTAGGCGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis SK321

42.384

96.588

0.409
  radA Streptococcus mitis NCTC 12261

42.384

96.588

0.409
  radA Streptococcus pneumoniae TIGR4

42.444

95.949

0.407
  radA Streptococcus pneumoniae R6

42.444

95.949

0.407
  radA Streptococcus pneumoniae Rx1

42.444

95.949

0.407
  radA Streptococcus pneumoniae D39

42.444

95.949

0.407