Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT57_RS28670 Genome accession   NZ_CP108055
Coordinates   6179880..6181289 (-) Length   469 a.a.
NCBI ID   WP_328749421.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6174880..6186289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS28645 (OHT57_28670) - 6174997..6175680 (-) 684 WP_328749416.1 hypothetical protein -
  OHT57_RS28650 (OHT57_28675) - 6175665..6176207 (-) 543 WP_328749417.1 SigE family RNA polymerase sigma factor -
  OHT57_RS28655 (OHT57_28680) - 6176445..6177380 (-) 936 WP_328749418.1 A/G-specific adenine glycosylase -
  OHT57_RS28660 (OHT57_28685) - 6177728..6178573 (+) 846 WP_328749419.1 hypothetical protein -
  OHT57_RS28665 (OHT57_28690) disA 6178674..6179798 (-) 1125 WP_328749420.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT57_RS28670 (OHT57_28695) radA/sms 6179880..6181289 (-) 1410 WP_328749421.1 DNA repair protein RadA Machinery gene
  OHT57_RS28675 (OHT57_28700) - 6181496..6183187 (+) 1692 WP_328749422.1 hypothetical protein -
  OHT57_RS28680 (OHT57_28705) - 6183262..6184056 (-) 795 WP_328753354.1 hypothetical protein -
  OHT57_RS28685 (OHT57_28710) - 6184191..6185141 (+) 951 WP_328749423.1 Ppx/GppA phosphatase family protein -
  OHT57_RS28690 (OHT57_28715) - 6185282..6186106 (+) 825 WP_328749424.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49659.67 Da        Isoelectric Point: 7.1773

>NTDB_id=652301 OHT57_RS28670 WP_328749421.1 6179880..6181289(-) (radA/sms) [Streptomyces sp. NBC_00285]
MAARTKSAKERPSYRCTECGWQAAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGEVDGRQATARSTGVPEL
DRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRVSKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALSKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRGRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652301 OHT57_RS28670 WP_328749421.1 6179880..6181289(-) (radA/sms) [Streptomyces sp. NBC_00285]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAGCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGGCGGCCAAGTGGCT
CGGTCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTGCGTACGACGGCCCCGGGCC
GTGTCACCACCTCCGCCGTGCCCATCGGCGAGGTGGACGGGCGTCAGGCCACGGCCCGTTCGACCGGGGTGCCCGAGCTG
GACCGGGTGCTCGGCGGTGGTCTCGTGCCCGGCGCGGTGGCGCTCCTCGCGGGCGAACCCGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTGGCCGCCAAGTCGGCGAGCGAAGAGCACCGCACGCTCTATGTGACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCGATCGACGACCACCTGTATCTCGCAGCCGAGACCGACCTGTCGGCCGTCCTC
GGACATCTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTGGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGGGTGTCGAAGGACCGCGGGATGTCGACCCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTCCTCGAACACCTCGTGGACGTGGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTGAGGCTCGTCCGGGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACAGGGCTCACCGACCCGAGTGGACTTTTCCTGACACGTCGTGACGAACCGGTCCCCG
GCACCTGTCTCACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAAGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACCACCTCGGGGCTGGAGACGTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCGCTCAGCAAGCGGGACATCTACTCCGCGACCGTCGGTGGCGTAAAGCTTTCGGAACCTGCCGCGGACCTGG
CGATCGCCCTCGCGCTGGCGTCGGCGGCCAGCGACACCCCGCTGCCCAAAAACCTCGTCGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTTACGGGCGTCCAGCGCAGGCTCTCCGAGGCACACCGTCTGGGCTTCACACATGCACTCGT
ACCGGGCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTCCTGGAAGTAGCCGACATAGGGGACGCCCTGAGGGTCCTTC
CGCGAGGTCGTCGGCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus mitis SK321

43.333

95.949

0.416
  radA Streptococcus mitis NCTC 12261

43.333

95.949

0.416
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416