Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT57_RS27460 Genome accession   NZ_CP108055
Coordinates   5974553..5975188 (+) Length   211 a.a.
NCBI ID   WP_328749176.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5969553..5980188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS27445 (OHT57_27470) - 5971185..5972855 (-) 1671 WP_328749173.1 molybdopterin-dependent oxidoreductase -
  OHT57_RS27450 (OHT57_27475) - 5972867..5973070 (-) 204 WP_328749174.1 hypothetical protein -
  OHT57_RS27455 (OHT57_27480) - 5973288..5974556 (+) 1269 WP_328749175.1 sensor histidine kinase -
  OHT57_RS27460 (OHT57_27485) vraR 5974553..5975188 (+) 636 WP_328749176.1 response regulator transcription factor Regulator
  OHT57_RS27465 (OHT57_27490) - 5975371..5976153 (-) 783 WP_328749177.1 inositol monophosphatase family protein -
  OHT57_RS27470 (OHT57_27495) - 5976209..5977108 (+) 900 WP_328749178.1 LysR family transcriptional regulator -
  OHT57_RS27475 (OHT57_27500) - 5977154..5977762 (-) 609 WP_328749179.1 NAD(P)-binding oxidoreductase -
  OHT57_RS27480 (OHT57_27505) - 5978009..5978467 (+) 459 WP_328749180.1 DUF3052 domain-containing protein -
  OHT57_RS27485 (OHT57_27510) - 5978675..5979568 (+) 894 WP_328749182.1 glycosyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22390.88 Da        Isoelectric Point: 5.0489

>NTDB_id=652296 OHT57_RS27460 WP_328749176.1 5974553..5975188(+) (vraR) [Streptomyces sp. NBC_00285]
MTVDILIVDDHPVVRFGLRGMLEAYDDLRVVGEAGSGDEAIVLAAAMLPDVVLMDLRMPGTDGTAATARIRQEHPGIRVL
VLTTYEGDADILSAIEAGATGYLLKDTPIGTLTDAIRAAARGETVLAPPVAARLVTRMQAPAVEQLTPREVQVLDLVARG
LSNGEIGRQLYIGEATVKTHLLRTFVKLGVNDRTAAVTVALSRGVLTPPHQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=652296 OHT57_RS27460 WP_328749176.1 5974553..5975188(+) (vraR) [Streptomyces sp. NBC_00285]
ATGACCGTCGACATCCTGATCGTCGACGATCACCCCGTCGTACGCTTCGGCCTCCGCGGCATGCTTGAGGCCTACGACGA
CCTGCGGGTCGTCGGCGAGGCGGGCTCCGGTGACGAGGCGATCGTCCTCGCCGCCGCGATGCTCCCGGACGTCGTCCTGA
TGGACCTGCGCATGCCGGGCACCGACGGTACCGCCGCGACGGCGCGCATCCGCCAGGAGCACCCCGGCATTCGCGTGCTC
GTGCTGACCACCTACGAAGGTGACGCCGACATCCTGTCGGCGATCGAGGCCGGCGCCACCGGGTACCTGCTCAAGGACAC
CCCGATCGGTACCCTGACCGACGCGATCCGGGCGGCCGCCCGCGGCGAGACGGTCCTCGCCCCACCGGTCGCCGCCCGGC
TCGTGACGCGCATGCAGGCGCCTGCCGTGGAACAGTTGACCCCCCGCGAGGTTCAGGTGCTCGACCTCGTCGCGCGCGGC
CTGTCCAACGGAGAGATCGGCCGGCAGCTGTACATCGGCGAAGCGACAGTGAAGACGCACCTCCTGCGTACGTTCGTGAA
GCTGGGCGTGAACGACCGCACCGCGGCCGTCACCGTCGCTCTCTCCCGAGGCGTTCTCACCCCACCGCACCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-200)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.308

98.578

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

35.747

100

0.374