Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT76_RS33595 Genome accession   NZ_CP108053
Coordinates   7392751..7393404 (-) Length   217 a.a.
NCBI ID   WP_328876684.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7387751..7398404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS33575 (OHT76_33605) - 7387859..7388662 (-) 804 WP_328874605.1 alpha/beta hydrolase -
  OHT76_RS33580 (OHT76_33610) - 7388655..7389239 (-) 585 WP_328874606.1 TetR-like C-terminal domain-containing protein -
  OHT76_RS33585 (OHT76_33615) - 7389300..7389470 (-) 171 WP_328874607.1 hypothetical protein -
  OHT76_RS33590 (OHT76_33620) - 7389663..7392740 (+) 3078 WP_328874608.1 hypothetical protein -
  OHT76_RS33595 (OHT76_33625) vraR 7392751..7393404 (-) 654 WP_328876684.1 response regulator transcription factor Regulator
  OHT76_RS33600 (OHT76_33630) - 7393404..7394228 (-) 825 WP_328874609.1 histidine kinase -
  OHT76_RS33605 (OHT76_33635) - 7394330..7395067 (+) 738 WP_328874610.1 ABC transporter ATP-binding protein -
  OHT76_RS33610 (OHT76_33640) - 7395064..7397376 (+) 2313 WP_328874611.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23343.13 Da        Isoelectric Point: 6.6475

>NTDB_id=652133 OHT76_RS33595 WP_328876684.1 7392751..7393404(-) (vraR) [Streptomyces sp. NBC_00287]
MAPRVLVVDDQTLIRTGFRLILTARGIEVVGEAADGAEAVSLAHELKPDVVLMDIRMPTMDGLEATRRILRQSPSCRVLM
LTTFDLDHYVYTALSIGASGFLLKDVTPEHLAAAVRLVSTGDALLAPSITRRLVERFADSTPSAPPASLESLTPRELEVL
TLLGRGLSNTELAAHLTLSEATVKSHVARIFAKLTLRDRAQAVVLAYETGLVKPGAP

Nucleotide


Download         Length: 654 bp        

>NTDB_id=652133 OHT76_RS33595 WP_328876684.1 7392751..7393404(-) (vraR) [Streptomyces sp. NBC_00287]
ATGGCGCCCCGGGTGCTGGTCGTCGACGACCAGACGCTGATCCGGACCGGTTTCCGGCTGATCCTGACCGCGCGCGGTAT
CGAAGTGGTCGGCGAGGCGGCGGACGGCGCGGAAGCGGTGTCGCTGGCGCACGAGTTGAAGCCGGACGTGGTCCTGATGG
ACATCCGGATGCCGACGATGGACGGCCTGGAGGCCACCCGCCGCATCCTCCGACAGTCGCCTTCCTGCCGGGTGTTGATG
CTGACGACATTCGACCTGGACCACTACGTCTATACGGCCCTGTCGATCGGGGCGAGCGGCTTCCTGCTGAAGGACGTGAC
TCCGGAACACCTGGCGGCAGCGGTACGCCTGGTCAGCACCGGCGACGCACTCCTGGCCCCCTCCATCACCCGCCGCCTGG
TGGAACGCTTCGCGGACTCGACGCCCTCCGCCCCACCCGCTTCCCTGGAGTCGCTCACGCCTCGGGAACTGGAGGTCCTG
ACCCTGCTGGGCCGGGGCCTGTCCAACACGGAACTGGCCGCGCATCTGACCCTCAGCGAGGCGACGGTGAAGTCGCATGT
GGCGCGCATCTTCGCAAAGCTGACGCTGCGCGACCGGGCGCAGGCGGTGGTGCTGGCGTACGAAACGGGCCTGGTGAAGC
CCGGAGCGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(150-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.857

100

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

39.91

100

0.41