Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT76_RS24455 Genome accession   NZ_CP108053
Coordinates   5366513..5367922 (-) Length   469 a.a.
NCBI ID   WP_328873000.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5361513..5372922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS24430 (OHT76_24450) - 5362101..5362640 (-) 540 WP_186283894.1 SigE family RNA polymerase sigma factor -
  OHT76_RS24435 (OHT76_24455) - 5362862..5363779 (-) 918 WP_328872997.1 A/G-specific adenine glycosylase -
  OHT76_RS24440 (OHT76_24460) - 5364004..5364090 (+) 87 Protein_4819 histidine kinase -
  OHT76_RS24445 (OHT76_24465) - 5364422..5365249 (+) 828 WP_328872998.1 hypothetical protein -
  OHT76_RS24450 (OHT76_24470) disA 5365307..5366431 (-) 1125 WP_328872999.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT76_RS24455 (OHT76_24475) radA/sms 5366513..5367922 (-) 1410 WP_328873000.1 DNA repair protein RadA Machinery gene
  OHT76_RS24460 (OHT76_24480) - 5368140..5369885 (+) 1746 WP_328873001.1 hypothetical protein -
  OHT76_RS24465 (OHT76_24485) - 5369898..5370746 (-) 849 WP_328873002.1 hypothetical protein -
  OHT76_RS24470 (OHT76_24490) - 5370830..5371762 (+) 933 WP_328873003.1 Ppx/GppA phosphatase family protein -
  OHT76_RS24475 (OHT76_24495) - 5372051..5372875 (+) 825 WP_328873004.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49808.96 Da        Isoelectric Point: 8.0178

>NTDB_id=652106 OHT76_RS24455 WP_328873000.1 5366513..5367922(-) (radA/sms) [Streptomyces sp. NBC_00287]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTAPGRVTNSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKALHDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652106 OHT76_RS24455 WP_328873000.1 5366513..5367922(-) (radA/sms) [Streptomyces sp. NBC_00287]
ATGGCTGCCCGTACGAAGTCCGCCAAAGAGCGCCCGTCCTACCGCTGCACCGAGTGTGGGTGGCAGACGGCGAAGTGGCT
CGGTCGGTGCCCCGAGTGTCAGGCCTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCGCCCGGGC
GCGTGACCAACTCGGCCGTGCCCATCGGGCAGGTCGACGGGCGGCAGGCGACCGCGCGGTCCACCGGGGTGCCCGAACTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGGGCCGTCGTACTGCTCGCCGGTGAGCCCGGTGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCGGCCAAGGCGGCCAGTGACGAGCACCGCACCCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGATCGCATCAAGGCCCTCCACGACCATCTGTATCTCGCCGCCGAGACCGACCTGGCGGCCGTGCTC
GGTCACTTGGACGCCGTCAAGCCGTCCCTGCTGATCCTCGACTCCGTCCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TTGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCCCGCCTGCTGGAGCACCTCGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTGGTGCGCGGCGTCAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATTACTGGCCTTACCGACCCAAGCGGACTTTTCCTGACTCGTCGTGACGAACCGGTCCCCG
GTACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAAGTACAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCGCGCCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTACTGGAACAGCGCGGCAG
AATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCTGACCTCG
CCATCGCCCTCGCGCTGGCCAGCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTT
GCGGGCGAGGTCAGACGGGTTACGGGCGTCCAGCGCCGGCTCTCGGAAGCGCACCGCCTCGGCTTCACGCACGCGCTCGT
GCCGGGCGATCCCGGGAAGATCCCTCCCGGTATGAAGGTGCTGGAAGTCGCGGACATAGGGGACGCCCTCCGGGTCCTTC
CGCGCTCGCGTCGACGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus mitis SK321

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.444

95.949

0.407
  radA Streptococcus pneumoniae D39

42.444

95.949

0.407
  radA Streptococcus pneumoniae R6

42.444

95.949

0.407
  radA Streptococcus pneumoniae TIGR4

42.444

95.949

0.407