Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R15_RS05760 Genome accession   NZ_AP022032
Coordinates   1204099..1204836 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP3-S18-ESBL-08     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199099..1209836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R15_RS05730 (WP3S18E08_11240) yfiL 1199258..1199623 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  H7R15_RS05735 (WP3S18E08_11250) aroF 1199833..1200903 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R15_RS05740 (WP3S18E08_11260) tyrA 1200914..1202035 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R15_RS05745 (WP3S18E08_11270) pheA 1202078..1203238 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R15_RS05750 pheL 1203337..1203384 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R15_RS05755 (WP3S18E08_11280) raiA 1203488..1203829 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R15_RS05760 (WP3S18E08_11290) comL 1204099..1204836 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R15_RS05765 (WP3S18E08_11300) rluD 1204971..1205951 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R15_RS05770 (WP3S18E08_11310) yfiH 1205948..1206679 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  H7R15_RS05775 (WP3S18E08_11320) clpC 1206809..1209382 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=65210 H7R15_RS05760 WP_000197686.1 1204099..1204836(-) (comL) [Escherichia coli strain WP3-S18-ESBL-08]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=65210 H7R15_RS05760 WP_000197686.1 1204099..1204836(-) (comL) [Escherichia coli strain WP3-S18-ESBL-08]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment