Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG985_RS31255 Genome accession   NZ_CP108046
Coordinates   6901447..6903375 (-) Length   642 a.a.
NCBI ID   WP_371671687.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6896447..6908375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS31240 (OG985_31135) - 6896695..6897960 (+) 1266 WP_371671684.1 NAD(P)/FAD-dependent oxidoreductase -
  OG985_RS31245 (OG985_31140) dnaG 6897999..6899900 (+) 1902 WP_371671685.1 DNA primase -
  OG985_RS31250 (OG985_31145) - 6900047..6901396 (+) 1350 WP_371671686.1 RNA polymerase sigma factor -
  OG985_RS31255 (OG985_31150) rcrQ 6901447..6903375 (-) 1929 WP_371671687.1 ABC transporter ATP-binding protein Regulator
  OG985_RS31260 (OG985_31155) rcrP 6903375..6905108 (-) 1734 WP_371671688.1 ABC transporter ATP-binding protein Regulator
  OG985_RS31265 (OG985_31160) - 6905390..6906844 (-) 1455 WP_371671689.1 FGGY-family carbohydrate kinase -
  OG985_RS31270 (OG985_31165) - 6907064..6907369 (-) 306 WP_371671690.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69641.24 Da        Isoelectric Point: 5.9568

>NTDB_id=652026 OG985_RS31255 WP_371671687.1 6901447..6903375(-) (rcrQ) [Streptomyces sp. NBC_00289]
MAGPMGRMMAGGGPDQRSMDFKVSGKRLIARFKPERVTIYGLLICVVVSVGLSVIGPKILGKATDLVFAGIVGRQMPAGI
TKEQALQSMRERGEGSVADMLRSTNFTPGEGIDFGAVGDVLLLALVTFLVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAVMFWVSWLLALVALVTVPLSAFVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHALVKVFGRQEESAAQFAEENDRLYEAGFKAQFNSGIMQPLMLFVSNINYVLVA
VVGGLRVASGALSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQADPVPGVRPEELRGLVALE
RVSFRYEPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIAKMSRDELRGGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGSHTDLLTADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=652026 OG985_RS31255 WP_371671687.1 6901447..6903375(-) (rcrQ) [Streptomyces sp. NBC_00289]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGTGTCGGGCAAACG
CCTGATCGCCCGGTTCAAACCGGAACGCGTCACGATCTACGGGCTGTTGATCTGTGTGGTCGTCAGCGTGGGTCTCAGCG
TGATCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCGGGCATCGTCGGACGGCAGATGCCGGCCGGGATC
ACGAAGGAGCAGGCGCTTCAGTCGATGCGGGAGCGGGGCGAGGGCTCGGTCGCCGACATGCTCCGCAGTACGAACTTCAC
GCCGGGCGAGGGCATCGACTTCGGCGCGGTCGGGGACGTACTCCTGCTCGCGCTCGTCACGTTCCTGGTCGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGCACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGGGCGACGAACGACATCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGGCAGCTGATCAACTCGGTGCTCACCATCATCGGCGTGCTCGCGGTGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTCACCGTGCCGCTGTCGGCCTTCGTCGCCACCCGGATCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACCGGCAAACTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCGCAGTTCGCCGAGGAGAACGACAGGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGCTGTTCGTGTCGAACATCAACTACGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTGGCGTCCGGCGCGCTGTCCATCGGTGACGTGCAGGCGTTCGTCCAGTACTCGCGGCAGTT
CTCGATGCCGTTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCGGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGCAGGCCGACCCGGTGCCGGGAGTGCGGCCCGAGGAACTGCGCGGGCTGGTGGCGCTGGAG
CGCGTCTCGTTCCGCTACGAGCCCGAGAAGCCGCTGATCGAGGACCTCTCGCTGACGGTGGAGCCGGGGCACACGGTCGC
GATCGTCGGCCCGACCGGGGCCGGCAAGACGACCCTCGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGACGCA
TCACCCTCGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAACTCCGCGGCGGCATCGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCCTCGCGCGAGGTGACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCTGCCCACGCGGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACGGTGCTCGACGACGAGGGCTCGG
GTGTCAGCGCCGGTGAGAAGCAACTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTCGCGCACGGGCGGACGTCCTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCGATCGTGGAGCAGG
GGTCGCACACCGACCTGCTCACGGCCGACGGCGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386