Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ77_RS01665 Genome accession   NZ_CP091521
Coordinates   356471..357283 (-) Length   270 a.a.
NCBI ID   WP_027008867.1    Uniprot ID   -
Organism   Conchiformibius kuhniae strain 17694     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 351471..362283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ77_RS01645 (LVJ77_01795) - 352014..352880 (+) 867 WP_027008863.1 ParB/RepB/Spo0J family partition protein -
  LVJ77_RS01650 (LVJ77_01790) - 352877..353434 (+) 558 WP_027008864.1 pseudouridine synthase -
  LVJ77_RS01655 (LVJ77_01785) argS 353505..355223 (+) 1719 WP_027008865.1 arginine--tRNA ligase -
  LVJ77_RS01660 (LVJ77_01780) prpF 355278..356453 (-) 1176 WP_027008866.1 2-methylaconitate cis-trans isomerase PrpF -
  LVJ77_RS01665 (LVJ77_01775) comL 356471..357283 (-) 813 WP_027008867.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ77_RS01670 (LVJ77_01765) - 357481..358362 (+) 882 WP_169718726.1 M15 family metallopeptidase -
  LVJ77_RS01675 (LVJ77_01760) grxD 358436..358750 (+) 315 WP_027008868.1 Grx4 family monothiol glutaredoxin -
  LVJ77_RS01680 (LVJ77_01755) apbC 358750..359811 (+) 1062 WP_034334142.1 iron-sulfur cluster carrier protein ApbC -
  LVJ77_RS01685 (LVJ77_01750) - 359841..360689 (+) 849 WP_027008870.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 31340.32 Da        Isoelectric Point: 9.1742

>NTDB_id=652026 LVJ77_RS01665 WP_027008867.1 356471..357283(-) (comL) [Conchiformibius kuhniae strain 17694]
MKQPLSALLLAALLLSACAGTDQSKISKDARQTQNWQTEQLYSEARKELDAGNYSRAATLYEILRSRQPEGRYVEQALME
EAYAHYKNEEPVKALASLERFEKHFPASIHTDYALYLRGLVQFDEDTSFLNKLSAQDWSDRDPQANRDTYKTFETLVKRF
PNSKYAPEARKRMTRLVEALGGHEIAIARYYAKRGAHLAANNRAQRIVQQFQNTSYPEEALAIMVFTYEKMGKTQLADDA
RRVLQTNYPNSSYLQKAWVADDMPWWRYWK

Nucleotide


Download         Length: 813 bp        

>NTDB_id=652026 LVJ77_RS01665 WP_027008867.1 356471..357283(-) (comL) [Conchiformibius kuhniae strain 17694]
ATGAAACAACCCCTGTCGGCACTCCTGCTTGCCGCACTGCTTTTGAGCGCGTGCGCCGGCACCGACCAGAGCAAAATCAG
CAAAGACGCCCGCCAAACCCAAAACTGGCAAACCGAGCAACTGTATTCCGAAGCACGGAAAGAACTGGACGCAGGCAACT
ACAGCCGCGCCGCCACACTCTACGAAATCCTGCGTTCGCGCCAGCCCGAAGGACGCTATGTCGAACAAGCCCTGATGGAA
GAAGCCTACGCCCACTACAAAAACGAAGAGCCCGTCAAAGCACTGGCATCACTGGAGCGTTTTGAAAAACACTTCCCCGC
CAGCATCCACACCGACTACGCCCTGTACCTGCGCGGCTTGGTACAATTTGACGAAGACACCTCCTTTCTCAACAAACTTT
CCGCCCAAGACTGGTCCGACCGCGACCCGCAAGCCAACCGCGACACCTACAAAACCTTTGAAACACTGGTCAAACGCTTT
CCCAACAGCAAATACGCCCCTGAAGCGCGCAAACGCATGACACGGCTGGTGGAAGCACTGGGCGGACACGAAATCGCCAT
CGCCCGCTACTACGCCAAACGCGGCGCCCACCTTGCCGCCAACAACCGCGCCCAGCGCATCGTCCAACAATTCCAAAACA
CCTCCTACCCCGAAGAAGCCTTGGCGATTATGGTGTTTACCTACGAAAAAATGGGCAAAACGCAATTGGCGGACGATGCG
CGGCGCGTGTTGCAAACCAATTACCCCAACAGCAGCTACCTGCAAAAAGCATGGGTGGCAGACGACATGCCTTGGTGGCG
TTATTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(37-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

57.249

99.63

0.57
  comL Neisseria meningitidis MC58

56.506

99.63

0.563