Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG985_RS22245 Genome accession   NZ_CP108046
Coordinates   4913524..4914123 (-) Length   199 a.a.
NCBI ID   WP_371670094.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4908524..4919123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS22220 (OG985_22090) - 4908555..4909829 (-) 1275 WP_371670089.1 aspartate kinase -
  OG985_RS22225 (OG985_22095) - 4910099..4910800 (+) 702 WP_371670090.1 response regulator transcription factor -
  OG985_RS22230 (OG985_22100) - 4910797..4912098 (+) 1302 WP_371670091.1 ATP-binding protein -
  OG985_RS22235 (OG985_22105) - 4912121..4912633 (-) 513 WP_371670092.1 SgcJ/EcaC family oxidoreductase -
  OG985_RS22240 (OG985_22110) - 4912872..4913531 (-) 660 WP_371670093.1 DUF5063 domain-containing protein -
  OG985_RS22245 (OG985_22115) recR 4913524..4914123 (-) 600 WP_371670094.1 recombination mediator RecR Machinery gene
  OG985_RS22250 (OG985_22120) - 4914184..4914525 (-) 342 WP_371670095.1 YbaB/EbfC family nucleoid-associated protein -
  OG985_RS22255 (OG985_22125) - 4914832..4915581 (+) 750 WP_371670096.1 SLATT domain-containing protein -
  OG985_RS22260 (OG985_22130) - 4915722..4917680 (-) 1959 WP_371670097.1 serine/threonine-protein kinase -
  OG985_RS22265 (OG985_22135) - 4917759..4918238 (-) 480 WP_371670098.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG985_RS22270 (OG985_22140) - 4918235..4918858 (-) 624 WP_371670099.1 DJ-1/PfpI family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21764.08 Da        Isoelectric Point: 4.9909

>NTDB_id=652011 OG985_RS22245 WP_371670094.1 4913524..4914123(-) (recR) [Streptomyces sp. NBC_00289]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQTLLEVKAKVRFCATCGNVAQEELCNICRDSRRDPSV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=652011 OG985_RS22245 WP_371670094.1 4913524..4914123(-) (recR) [Streptomyces sp. NBC_00289]
GTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGCCGGCTGGCGCAGACCCTGCTCGAGGTGAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACAGCCGCCGCGACCCCTCGGTG
ATCTGCGTGGTGGAGGAGCCGAAGGACGTGGTCGCCGTCGAGCGCACCCGTGAGTTCCGCGGCCGGTATCACGTGCTGGG
CGGAGCGATCAGCCCGATCGAGGGTGTCGGCCCCGACGACCTGCGCATCAGGGAGCTGCTGGCCCGCCTCGCGGACGGCG
CGGTCACGGAGCTGATCCTCGCCACCGACCCGAACCTCGAGGGTGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGAGACCTGGAATACGCGGACGAGGTGACCCT
CGGGCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457