Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ80_RS00460 Genome accession   NZ_CP091519
Coordinates   76183..76983 (-) Length   266 a.a.
NCBI ID   WP_034292216.1    Uniprot ID   A0A376BUY0
Organism   Alysiella crassa strain S6     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 71183..81983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS00450 (LVJ80_15025) - 72133..72336 (-) 204 WP_377896425.1 hypothetical protein -
  LVJ80_RS00455 (LVJ80_09850) smc 72611..76078 (+) 3468 WP_034292168.1 chromosome segregation protein SMC -
  LVJ80_RS00460 (LVJ80_09845) comL 76183..76983 (-) 801 WP_034292216.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ80_RS00465 (LVJ80_09840) carA 77246..78379 (-) 1134 WP_034292170.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  LVJ80_RS00470 (LVJ80_09835) - 78937..79440 (+) 504 WP_034292173.1 hypothetical protein -
  LVJ80_RS00475 (LVJ80_09830) - 79511..80737 (+) 1227 WP_034292174.1 beta-ketoacyl-ACP synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30699.74 Da        Isoelectric Point: 9.1748

>NTDB_id=651998 LVJ80_RS00460 WP_034292216.1 76183..76983(-) (comL) [Alysiella crassa strain S6]
MKKMLLALSVAAVLSGCAANQSKMSPDEKLTQGWTAEQLYSEARNELNSGNYSRAVSLYDVLRARQPDGRYAEQSLLDTA
YAHYKDEEPKKALLALARFQHHYPASVDMDYALYLKGLVLFAEDQSFLNKLSSQDWSDRDPIANRKAYYVFEELVRRFPS
SKYADDATKRMAQLVDALAGHEIAIARYYAKRGAYLAANNRAQNVIKDFQNTRFVEESLAIMMFTYNKMNKPTLAADVRR
VLAHNFKNSPYLQHEWQADDRPWWRW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=651998 LVJ80_RS00460 WP_034292216.1 76183..76983(-) (comL) [Alysiella crassa strain S6]
ATGAAAAAAATGTTGTTGGCTTTGTCGGTGGCGGCGGTGTTGTCGGGCTGCGCGGCGAATCAAAGCAAAATGAGTCCAGA
TGAAAAATTAACGCAAGGTTGGACAGCCGAGCAGCTATACAGCGAAGCGCGTAACGAATTGAATTCGGGTAATTATTCAC
GCGCCGTGTCTTTGTATGACGTGTTACGCGCCCGCCAACCCGATGGTCGCTACGCCGAACAATCGCTATTGGACACCGCA
TACGCGCATTATAAAGACGAAGAGCCGAAAAAAGCCTTGCTCGCTTTGGCGCGTTTCCAGCACCACTATCCCGCCAGCGT
GGACATGGATTATGCTTTATATTTGAAAGGCTTGGTGCTGTTTGCGGAAGACCAATCGTTTTTGAACAAATTGTCTTCGC
AAGACTGGTCAGACCGCGACCCCATTGCCAATCGCAAAGCCTATTATGTGTTTGAAGAACTCGTGCGCCGCTTTCCGTCC
AGCAAATACGCCGATGACGCAACCAAACGCATGGCGCAATTGGTGGACGCATTGGCAGGACATGAAATCGCCATTGCCCG
CTATTATGCCAAACGCGGCGCGTATTTAGCCGCCAATAATCGCGCCCAAAACGTGATTAAAGATTTCCAAAACACCCGTT
TTGTAGAAGAATCTTTGGCAATTATGATGTTTACTTACAACAAAATGAATAAACCCACATTGGCAGCAGACGTGCGCCGC
GTGTTGGCACACAATTTCAAAAACAGCCCCTATTTACAACACGAATGGCAAGCCGATGACAGACCTTGGTGGCGTTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BUY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

62.03

100

0.62
  comL Neisseria meningitidis MC58

61.654

100

0.617