Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG985_RS14450 Genome accession   NZ_CP108046
Coordinates   3157477..3158256 (+) Length   259 a.a.
NCBI ID   WP_371668734.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3152477..3163256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS14435 (OG985_14310) - 3152567..3153100 (+) 534 WP_371674370.1 TerD family protein -
  OG985_RS14440 (OG985_14315) - 3153261..3156167 (-) 2907 WP_371668732.1 vitamin B12-dependent ribonucleotide reductase -
  OG985_RS14445 (OG985_14320) nrdR 3156332..3156910 (-) 579 WP_371668733.1 transcriptional regulator NrdR -
  OG985_RS14450 (OG985_14325) dinR/lexA 3157477..3158256 (+) 780 WP_371668734.1 transcriptional repressor LexA Regulator
  OG985_RS14455 (OG985_14330) - 3158523..3160508 (-) 1986 WP_371668735.1 ATP-dependent DNA helicase -
  OG985_RS14460 (OG985_14335) - 3160960..3161781 (-) 822 WP_371668736.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27999.67 Da        Isoelectric Point: 6.9854

>NTDB_id=651985 OG985_RS14450 WP_371668734.1 3157477..3158256(+) (dinR/lexA) [Streptomyces sp. NBC_00289]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGQKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IQGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=651985 OG985_RS14450 WP_371668734.1 3157477..3158256(+) (dinR/lexA) [Streptomyces sp. NBC_00289]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCCCGAGGGGCAAAAGCGCTCCCTGCCTGGACGACCTCCAGGCATCCGGGCGGACAGCTCCGGACTGA
CCGACCGACAGCGCCGGGTGATCGAGGTCATCAGGGACTCAGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGCGAGATC
GGTCAGGCGGTCGGCCTGTCCAGTACATCGTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
TGACCCGCACCGGCCGCGCGCCTACGAGGTGCGAGGCTCTGACCAGGGCGCCTCGGTGCAGCCCACCGACACCGCGGGCA
AGCCGGCCGCGTCCTACGTTCCCCTGGTCGGCCGCATCGCCGCCGGTGGACCGATCCTGGCCGAGGAATCGGTCGAGGAC
GTCTTCCCCCTGCCCCGACAGCTGGTCGGCGACGGGGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGAGACTGGGTCACGGTTCGCCGTCAGCCAGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGACGGCCACGTATGGCTCCTCCCGCACAACTCCGCCTACGAGCCG
ATCCAGGGCGACGACGCGACCATTCTCGGCAAGGTGGTGGCAGTACTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375