Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ79_RS05670 Genome accession   NZ_CP091518
Coordinates   1074102..1074908 (-) Length   268 a.a.
NCBI ID   WP_003786937.1    Uniprot ID   A0AAX2J545
Organism   Kingella kingae strain 4177/66     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069102..1079908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS05640 (LVJ79_05640) - 1069365..1069904 (-) 540 WP_003786949.1 hypothetical protein -
  LVJ79_RS05645 (LVJ79_05645) - 1069913..1070164 (-) 252 WP_003790504.1 acyl carrier protein -
  LVJ79_RS05650 (LVJ79_05650) - 1070171..1070431 (-) 261 WP_003786945.1 phosphopantetheine-binding protein -
  LVJ79_RS05655 (LVJ79_05655) - 1070639..1071208 (-) 570 WP_003786943.1 alpha/beta hydrolase-fold protein -
  LVJ79_RS05660 (LVJ79_05660) lpdA 1071287..1073080 (-) 1794 WP_032827722.1 dihydrolipoyl dehydrogenase -
  LVJ79_RS05665 (LVJ79_05665) folP 1073163..1074002 (-) 840 WP_003786939.1 dihydropteroate synthase -
  LVJ79_RS05670 (LVJ79_05670) comL 1074102..1074908 (-) 807 WP_003786937.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ79_RS05675 (LVJ79_05675) rluD 1074909..1076024 (+) 1116 WP_003786935.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ79_RS05680 (LVJ79_05680) rnc 1076028..1076753 (+) 726 WP_003786933.1 ribonuclease III -
  LVJ79_RS05685 (LVJ79_05685) - 1076804..1077559 (-) 756 WP_111694402.1 IS5 family transposase -
  LVJ79_RS05690 (LVJ79_05690) - 1077534..1077803 (-) 270 WP_071461657.1 transposase -
  LVJ79_RS05695 (LVJ79_05695) - 1077828..1078091 (+) 264 WP_032133164.1 transposase -
  LVJ79_RS05700 (LVJ79_05700) - 1078091..1078591 (+) 501 WP_268766544.1 IS5 family transposase -
  LVJ79_RS05705 (LVJ79_05705) - 1078612..1079571 (-) 960 WP_003786931.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31083.91 Da        Isoelectric Point: 7.9338

>NTDB_id=651985 LVJ79_RS05670 WP_003786937.1 1074102..1074908(-) (comL) [Kingella kingae strain 4177/66]
MKKFLLVISVAAALSACASNASTVSKDAQLTQNWSNDQLYSEARQELNDGNYTRATALYELLRARQADGRYTEQSLIESA
YAHFKNEEPAKALQNLARFEQNYPASVDMDYALYLKGLVLFAEDQSFLRRLASQDWSDRDPEANRRAFRVFEQLVNRYPN
SKYAEDARKRMAQLVDALGGHEIAIARYYAKRTAYLAANNRAQRILEQFQNTRYVEEALAIMVYTYEQMGNADMAEATRR
VLAQNLPNSPYLQQAWKPDEMPWWRWWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=651985 LVJ79_RS05670 WP_003786937.1 1074102..1074908(-) (comL) [Kingella kingae strain 4177/66]
ATGAAAAAATTTCTTCTTGTTATTTCGGTTGCGGCGGCTCTTTCGGCTTGTGCCAGCAACGCTTCTACGGTTAGTAAAGA
CGCGCAATTAACGCAAAATTGGTCAAACGACCAGCTATACAGCGAAGCGCGTCAGGAATTAAATGACGGTAATTATACAC
GCGCAACGGCGTTATATGAATTGCTACGCGCACGCCAAGCCGATGGTCGCTATACCGAGCAATCTTTGATTGAATCTGCC
TATGCCCATTTTAAAAACGAAGAACCTGCCAAAGCCTTGCAAAATTTAGCACGCTTTGAGCAAAACTACCCTGCCAGCGT
GGATATGGATTACGCGCTATATTTGAAAGGTTTGGTGTTGTTTGCCGAAGACCAATCGTTCCTACGCCGTTTGGCATCAC
AAGACTGGTCAGACCGCGACCCAGAAGCCAACCGCCGCGCATTCCGCGTATTTGAACAGCTGGTTAATCGCTATCCAAAC
AGCAAATATGCCGAAGATGCGCGTAAACGTATGGCGCAGTTGGTTGATGCTTTGGGCGGGCACGAAATCGCGATTGCGCG
TTACTATGCCAAACGCACGGCATATTTAGCCGCCAACAATCGCGCTCAACGCATTTTGGAGCAATTCCAAAACACGCGCT
ATGTGGAAGAAGCGTTGGCGATTATGGTTTATACCTACGAGCAAATGGGTAACGCTGATATGGCAGAAGCCACACGCCGC
GTGTTGGCGCAAAACTTGCCCAACAGCCCATATTTGCAGCAGGCGTGGAAACCCGATGAGATGCCTTGGTGGCGTTGGTG
GAAATGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

99.627

0.578
  comL Neisseria gonorrhoeae MS11

57.678

99.627

0.575