Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ84_RS05875 Genome accession   NZ_CP091516
Coordinates   989022..990659 (+) Length   545 a.a.
NCBI ID   WP_342345887.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 984022..995659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS05860 (LVJ84_05860) - 984198..985016 (-) 819 WP_115307371.1 pyruvate, water dikinase regulatory protein -
  LVJ84_RS05865 (LVJ84_05865) ppsA 985415..987813 (+) 2399 Protein_1163 phosphoenolpyruvate synthase -
  LVJ84_RS05870 (LVJ84_05870) recB 987927..988577 (+) 651 WP_244732925.1 UvrD-helicase domain-containing protein Machinery gene
  LVJ84_RS15240 - 988562..989113 (+) 552 WP_342345876.1 hypothetical protein -
  LVJ84_RS05875 (LVJ84_05875) recB 989022..990659 (+) 1638 WP_342345887.1 UvrD-helicase domain-containing protein Machinery gene
  LVJ84_RS05880 (LVJ84_05880) - 990739..991500 (+) 762 WP_244732929.1 PD-(D/E)XK nuclease family protein -
  LVJ84_RS05885 (LVJ84_05885) - 991550..992482 (+) 933 Protein_1168 pseudouridine synthase -
  LVJ84_RS05890 (LVJ84_05890) - 992615..993106 (-) 492 WP_115307367.1 DUF4124 domain-containing protein -
  LVJ84_RS05895 (LVJ84_05895) - 993130..993330 (-) 201 WP_115307366.1 hypothetical protein -
  LVJ84_RS05900 (LVJ84_05900) lpdA 993563..995356 (-) 1794 WP_115307365.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 545 a.a.        Molecular weight: 61152.27 Da        Isoelectric Point: 5.9080

>NTDB_id=651960 LVJ84_RS05875 WP_342345887.1 989022..990659(+) (recB) [Kingella potus strain 3/SID/1128]
MLDVYHALTEGAHRERLAQTIAQNWPVALIDEFQDTDPLQYEIFRRIFVQHDCPLFLVGDPKQAIYGFRGADIHAYLQAA
ADTPDCYTLAHNYRSHRSLTDTVGSLFMRKQRPFVLEGIAYPAVSAPRAESRVSPPQPPVRVRWLNEAGEAAANKDILRQ
RAADYCADEIAGLLNLAGGGRLNCNGRPVESGQIAVLVHTHNQGSMIKRALAARNIRSVSVQRESVFQSPEAEALAALLG
FWLEPQRTEPLRFVLAGILFCHTAEELYALNRDEKKLSEHIAAAEYCREIWQQQGIYAALAAFSRRYGLETRLLVQRNER
SLTNFRQLAELLAAEDEAAHTPSSLHNWLLVQMQQPQPAENTVLRLESDEALVKIVTVHAAKGLQYSFVFCPFLWDTPKA
GSNNWNILRREHGSELLEKSQLDEADRQQLEDEDLGERLRLLYVALTRAEEQLVIYAACCGNTPRSTFAYLLEGAPDAAR
ADIQTACKNAENPAEMLRRNWLDWVENLPPDAVCWQEGAPPPASFQMPPRSAGGYRAVRISPAPL

Nucleotide


Download         Length: 1638 bp        

>NTDB_id=651960 LVJ84_RS05875 WP_342345887.1 989022..990659(+) (recB) [Kingella potus strain 3/SID/1128]
CTGCTCGACGTGTACCACGCACTGACAGAAGGCGCACACCGCGAACGGCTTGCCCAAACCATCGCGCAAAACTGGCCGGT
TGCCCTGATTGACGAATTTCAGGACACCGACCCGCTGCAATACGAAATTTTCCGCCGCATCTTCGTGCAGCACGACTGCC
CGCTGTTTCTCGTCGGCGATCCCAAGCAGGCCATCTACGGCTTTCGCGGCGCAGACATCCACGCCTACCTGCAAGCCGCC
GCCGACACGCCCGACTGCTACACCCTCGCGCACAACTACCGCAGCCACCGCAGCCTGACCGATACCGTCGGCAGCCTTTT
TATGCGCAAACAACGCCCCTTCGTACTCGAAGGCATAGCCTATCCCGCCGTATCCGCCCCGCGTGCCGAAAGCCGCGTCA
GTCCGCCGCAGCCGCCCGTGCGCGTACGCTGGCTGAACGAAGCCGGCGAAGCCGCCGCCAATAAAGACATCTTGCGCCAA
CGGGCCGCCGACTATTGCGCCGACGAAATTGCCGGCCTGCTCAACCTGGCAGGCGGAGGCCGTCTGAATTGCAACGGCCG
CCCGGTAGAGAGCGGGCAGATTGCCGTCCTCGTCCACACCCACAACCAGGGCAGCATGATCAAACGCGCCCTGGCCGCAC
GCAACATCCGCAGCGTTTCCGTCCAGCGCGAATCCGTGTTCCAAAGCCCCGAAGCCGAAGCCCTGGCCGCCCTCTTGGGC
TTCTGGCTCGAACCGCAGCGCACCGAGCCCCTGCGCTTCGTCCTTGCCGGCATACTCTTCTGCCACACCGCAGAAGAACT
CTACGCGCTCAACCGCGACGAAAAAAAACTCTCCGAACACATCGCCGCCGCCGAATACTGCCGCGAAATCTGGCAGCAGC
AGGGTATTTATGCCGCCCTTGCCGCCTTCTCCCGCCGCTACGGCCTCGAAACCCGCCTGCTTGTGCAGCGCAACGAACGC
AGCCTGACCAACTTCCGCCAGCTTGCCGAACTCCTCGCCGCCGAAGACGAAGCCGCCCACACACCCTCTTCGCTGCACAA
CTGGCTGCTTGTGCAAATGCAGCAGCCGCAGCCGGCCGAAAACACCGTCCTGCGTCTGGAAAGCGACGAAGCCCTCGTCA
AAATCGTAACCGTCCACGCTGCCAAAGGCCTGCAATATTCCTTCGTTTTCTGCCCGTTTCTATGGGACACGCCCAAAGCA
GGCAGCAATAACTGGAACATCCTGCGCCGAGAACACGGCAGCGAACTGCTCGAAAAAAGCCAGCTTGACGAAGCGGACAG
GCAGCAGCTTGAGGACGAAGACCTCGGCGAACGCCTGCGCCTGCTCTACGTCGCCCTGACCCGCGCCGAAGAACAGCTTG
TCATCTACGCCGCCTGTTGCGGCAACACCCCGCGCAGCACCTTCGCCTATCTGCTCGAAGGTGCGCCCGATGCCGCACGC
GCCGATATTCAGACGGCCTGTAAAAATGCGGAAAACCCGGCCGAAATGCTGCGCCGCAACTGGCTCGACTGGGTGGAAAA
CTTGCCTCCCGATGCCGTCTGCTGGCAGGAAGGCGCACCGCCTCCCGCCTCTTTCCAAATGCCGCCGCGCAGCGCAGGCG
GATACCGCGCGGTAAGAATATCCCCCGCGCCGCTTTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(8-82)

UvrD-like helicase C-terminal domain (UvrD_C)

(301-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

53.125

99.817

0.53