Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ84_RS05870 Genome accession   NZ_CP091516
Coordinates   987927..988577 (+) Length   216 a.a.
NCBI ID   WP_244732925.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982927..993577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS05845 (LVJ84_05845) - 983210..983608 (-) 399 WP_244732899.1 hypothetical protein -
  LVJ84_RS05850 (LVJ84_05850) - 983723..983935 (-) 213 WP_244732901.1 hypothetical protein -
  LVJ84_RS05855 (LVJ84_05855) - 983884..984111 (-) 228 WP_244732917.1 hypothetical protein -
  LVJ84_RS05860 (LVJ84_05860) - 984198..985016 (-) 819 WP_115307371.1 pyruvate, water dikinase regulatory protein -
  LVJ84_RS05865 (LVJ84_05865) ppsA 985415..987813 (+) 2399 Protein_1163 phosphoenolpyruvate synthase -
  LVJ84_RS05870 (LVJ84_05870) recB 987927..988577 (+) 651 WP_244732925.1 UvrD-helicase domain-containing protein Machinery gene
  LVJ84_RS15240 - 988562..989113 (+) 552 WP_342345876.1 hypothetical protein -
  LVJ84_RS05875 (LVJ84_05875) recB 989022..990659 (+) 1638 WP_342345887.1 UvrD-helicase domain-containing protein Machinery gene
  LVJ84_RS05880 (LVJ84_05880) - 990739..991500 (+) 762 WP_244732929.1 PD-(D/E)XK nuclease family protein -
  LVJ84_RS05885 (LVJ84_05885) - 991550..992482 (+) 933 Protein_1168 pseudouridine synthase -
  LVJ84_RS05890 (LVJ84_05890) - 992615..993106 (-) 492 WP_115307367.1 DUF4124 domain-containing protein -
  LVJ84_RS05895 (LVJ84_05895) - 993130..993330 (-) 201 WP_115307366.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24628.19 Da        Isoelectric Point: 7.1932

>NTDB_id=651959 LVJ84_RS05870 WP_244732925.1 987927..988577(+) (recB) [Kingella potus strain 3/SID/1128]
MSDTAQPFDPLAIPVGGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAATAELKTRLRSRLDEALRRIR
GDETEGEADPFMRELLERARQQEPCERLELRLKAALSQFDNAAIYTIHGFCQRILGDYAFLCQVPFDTEFDENGRRRLET
YAQDFWRLHVAHDAQNARLAFDAGLLPENLLQEFSCSLARPDLSFRRYRKPIWRRP

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651959 LVJ84_RS05870 WP_244732925.1 987927..988577(+) (recB) [Kingella potus strain 3/SID/1128]
ATGTCTGATACCGCCCAACCGTTTGATCCGCTGGCCATTCCCGTCGGCGGCACCGCGCTGATCGAAGCCTCTGCCGGCAC
CGGCAAGACCTACGGCATTGCCGCCCTGTTTGCCCGCCTGATTCTGCTGGAAAAACTGCCGGTGGACAAAGTGCTGGTGG
TAACGTTTACCAAAGCCGCCACCGCCGAGTTGAAAACCCGCCTGCGTTCGCGGCTGGACGAGGCATTGCGCCGCATCCGT
GGCGACGAAACGGAAGGCGAAGCCGACCCGTTTATGCGGGAGCTGTTGGAACGGGCACGGCAGCAGGAGCCGTGCGAACG
TTTGGAACTGCGTTTGAAAGCCGCGCTGTCGCAGTTTGACAATGCGGCGATTTACACGATACACGGCTTCTGCCAACGGA
TTTTGGGCGATTACGCCTTCCTCTGCCAAGTGCCCTTCGATACCGAGTTTGACGAAAACGGCCGCCGCAGGCTGGAAACC
TACGCACAGGACTTTTGGCGGCTGCACGTTGCGCACGATGCGCAAAACGCGCGGCTGGCGTTTGACGCGGGGCTGCTGCC
GGAAAACCTGTTGCAGGAATTTTCCTGCAGCCTCGCCCGCCCTGATCTGTCTTTCAGACGGTACCGCAAACCGATTTGGC
GCAGGCCGTAG

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

56.889

100

0.593