Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ84_RS02445 Genome accession   NZ_CP091516
Coordinates   397829..398632 (-) Length   267 a.a.
NCBI ID   WP_115308099.1    Uniprot ID   A0A377R0W8
Organism   Kingella potus strain 3/SID/1128     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 392829..403632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS02395 (LVJ84_02395) - 393223..393426 (+) 204 WP_115308094.1 hypothetical protein -
  LVJ84_RS02400 (LVJ84_02400) - 393412..393663 (-) 252 WP_244732245.1 hypothetical protein -
  LVJ84_RS02405 (LVJ84_02405) rarD 393830..394744 (+) 915 WP_244733285.1 EamA family transporter RarD -
  LVJ84_RS02410 (LVJ84_02410) - 394843..394983 (+) 141 WP_244732247.1 hypothetical protein -
  LVJ84_RS02415 (LVJ84_02415) - 394985..395179 (+) 195 WP_244732249.1 hypothetical protein -
  LVJ84_RS02420 (LVJ84_02420) - 395260..395994 (+) 735 WP_172461223.1 hypothetical protein -
  LVJ84_RS02425 (LVJ84_02425) - 396125..396562 (-) 438 WP_115308098.1 hypothetical protein -
  LVJ84_RS02430 (LVJ84_02430) - 396566..396805 (-) 240 WP_147286597.1 hypothetical protein -
  LVJ84_RS02435 (LVJ84_02435) - 396817..396996 (+) 180 WP_244732251.1 hypothetical protein -
  LVJ84_RS02440 (LVJ84_02440) pdxH 397037..397670 (-) 634 Protein_481 pyridoxamine 5'-phosphate oxidase -
  LVJ84_RS02445 (LVJ84_02445) comL 397829..398632 (-) 804 WP_115308099.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ84_RS02450 (LVJ84_02450) rluD 398631..399754 (+) 1124 Protein_483 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ84_RS02455 (LVJ84_02455) - 399726..399902 (+) 177 WP_244732253.1 hypothetical protein -
  LVJ84_RS02460 (LVJ84_02460) - 399940..400272 (+) 333 WP_115308318.1 histidine triad nucleotide-binding protein -
  LVJ84_RS02465 (LVJ84_02465) tatA 400315..400524 (+) 210 WP_115308101.1 Sec-independent protein translocase subunit TatA -
  LVJ84_RS02470 (LVJ84_02470) tatB 400528..400998 (+) 471 WP_244732255.1 Sec-independent protein translocase protein TatB -
  LVJ84_RS02475 (LVJ84_02475) tatC 401008..401754 (+) 747 WP_115308103.1 twin-arginine translocase subunit TatC -
  LVJ84_RS14750 - 401875..402009 (+) 135 WP_280529849.1 hypothetical protein -
  LVJ84_RS02480 (LVJ84_02480) - 402006..402645 (-) 640 Protein_490 hypothetical protein -
  LVJ84_RS02485 (LVJ84_02485) - 402635..402772 (-) 138 WP_244732257.1 hypothetical protein -
  LVJ84_RS02490 (LVJ84_02490) - 402798..403070 (-) 273 WP_244732258.1 VOC family protein -
  LVJ84_RS15205 - 402953..403210 (-) 258 WP_342345870.1 VOC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30921.81 Da        Isoelectric Point: 8.8894

>NTDB_id=651953 LVJ84_RS02445 WP_115308099.1 397829..398632(-) (comL) [Kingella potus strain 3/SID/1128]
MKKFLLVAALGAALAGCASKGTSDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYELLESRFPQGRYAQQAQLDTAY
AYYKDEEREKALAAVERFQKLHPQHPSMDYALYLKGLILFNEDPSFLNKLASQDWSDRDPKANREAYQAFSELVRNYPQS
KYVEDATKRMTKLVDALAGNEMAVARYYAKRGAYLAAANRAQNIVTGFQNTRYVEEALAIMELSYQKMNRPQLAEDTRRI
LQQNFPQSPYLTRSWKDNDAPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=651953 LVJ84_RS02445 WP_115308099.1 397829..398632(-) (comL) [Kingella potus strain 3/SID/1128]
ATGAAAAAATTTCTTTTAGTAGCGGCATTGGGCGCGGCTCTTGCCGGATGCGCCAGCAAAGGCACCAGCGACAAAGACGC
GCAAATCACTCAGGATTGGTCGGTGGAAAAGCTCTACGCCGAAGCGCAAGACGAGTTGAACAGCAACAATTATACGCGGG
CTGTCAAGTTATACGAACTTTTGGAATCCCGTTTCCCGCAAGGCCGCTACGCGCAGCAGGCGCAGCTCGATACGGCCTAC
GCCTATTATAAGGACGAGGAACGCGAGAAAGCCCTCGCGGCGGTGGAACGCTTCCAAAAGCTGCACCCGCAGCATCCGAG
CATGGACTACGCCCTCTACCTCAAAGGGCTGATTCTGTTTAACGAAGACCCGTCCTTCCTCAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCCTATCAGGCCTTTTCCGAGCTGGTGCGCAACTATCCGCAGAGC
AAATATGTGGAAGACGCGACCAAACGCATGACCAAACTCGTGGACGCGCTTGCCGGCAACGAAATGGCCGTCGCCCGCTA
CTACGCCAAACGCGGAGCGTACCTGGCCGCCGCCAACCGTGCGCAAAACATCGTAACCGGCTTCCAAAACACCCGCTATG
TCGAAGAAGCCCTGGCGATTATGGAGCTTTCCTACCAGAAAATGAACAGGCCGCAGCTTGCAGAGGACACCCGCCGCATC
TTGCAGCAAAACTTCCCGCAAAGCCCCTACCTTACCCGCTCGTGGAAAGACAACGACGCACCCTGGTGGCGTTACTGGAA
ATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377R0W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

75.564

99.625

0.753
  comL Neisseria meningitidis MC58

75.188

99.625

0.749