Detailed information NTG0651937

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LVJ87_RS07560
• Genome accession: NZ_CP091515
• Coordinates: 1621606..1623090 (+)
• Length: 494 a.a.
• NCBI ID: WP_080690460.1
• Uniprot ID: -
• Organism: Snodgrassella alvi wkB2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1616606..1628090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ87_RS07550 (LVJ87_07550)	parC	1617715..1620032 (+)	2318	Protein_1457	DNA topoisomerase IV subunit A	-
LVJ87_RS07555 (LVJ87_07555)	-	1620039..1621613 (+)	1575	WP_025331230.1	HAMP domain-containing sensor histidine kinase	-
LVJ87_RS07560 (LVJ87_07560)	pilR	1621606..1623090 (+)	1485	WP_080690460.1	sigma-54 dependent transcriptional regulator	Regulator
LVJ87_RS07565 (LVJ87_07565)	-	1623090..1623851 (+)	762	WP_025331228.1	class I SAM-dependent methyltransferase	-
LVJ87_RS07570 (LVJ87_07570)	-	1623922..1624899 (+)	978	WP_025331227.1	hypothetical protein	-
LVJ87_RS07575 (LVJ87_07575)	amgK	1624970..1625974 (-)	1005	WP_025331226.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55559.33 Da
• Isoelectric Point: 5.1258

>NTDB_id=651937 LVJ87_RS07560 WP_080690460.1 1621606..1623090(+) (pilR) [Snodgrassella alvi wkB2]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=651937 LVJ87_RS07560 WP_080690460.1 1621606..1623090(+) (pilR) [Snodgrassella alvi wkB2]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAACAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATTTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.134	98.178	0.502
pilR	Acinetobacter baumannii strain A118	41.889	98.583	0.413