Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHT51_RS18905 Genome accession   NZ_CP108039
Coordinates   4330614..4332023 (+) Length   469 a.a.
NCBI ID   WP_328880115.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4325614..4337023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS18890 (OHT51_18935) - 4326726..4327655 (-) 930 WP_328880112.1 Ppx/GppA phosphatase family protein -
  OHT51_RS18895 (OHT51_18940) - 4327730..4328596 (+) 867 WP_328880113.1 hypothetical protein -
  OHT51_RS18900 (OHT51_18945) - 4328619..4330403 (-) 1785 WP_328880114.1 hypothetical protein -
  OHT51_RS18905 (OHT51_18950) radA 4330614..4332023 (+) 1410 WP_328880115.1 DNA repair protein RadA Machinery gene
  OHT51_RS18910 (OHT51_18955) disA 4332105..4333229 (+) 1125 WP_328425026.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT51_RS18915 (OHT51_18960) - 4333294..4334109 (-) 816 WP_328880116.1 hypothetical protein -
  OHT51_RS18920 (OHT51_18965) - 4334295..4334927 (+) 633 WP_328880117.1 phosphatase PAP2 family protein -
  OHT51_RS18925 (OHT51_18970) - 4334931..4335590 (-) 660 WP_328880118.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49602.68 Da        Isoelectric Point: 7.7222

>NTDB_id=651915 OHT51_RS18905 WP_328880115.1 4330614..4332023(+) (radA) [Streptomyces sp. NBC_00299]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAAAVRTTTPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADIGDALRVLPRSRRREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=651915 OHT51_RS18905 WP_328880115.1 4330614..4332023(+) (radA) [Streptomyces sp. NBC_00299]
ATGGCTGCCCGTACCAAGTCCACGAAGGACCGCCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGGCCGCGGTCCGTACGACGACGCCGGGGC
GGGTCACGACGTCCGCGCTGCCGATCGGGCAGGTCGACGGACGGCAGGCCACCGCGCGGCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTCGCGGCCGAGACCGATCTGGCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTCATCATGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGACGGCGC
ACCGGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGGGCGTCCAAGGAGCGCGGGATGTCCACCCTCC
TTGTGGGGCACGTCACCAAGGACGGGGCCATCGCCGGACCCCGCCTCCTCGAACATCTCGTGGACGTGGTGCTCAGCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGATGAGGGCATCACGGGCCTTGCCGACCCAAGCGGACTTTTCCTGACCCGTCGTGCCGAACCGGTCCCCG
GTACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAAGTCCAGGCGCTCACCGTCGACTCACAGATC
CCCTCGCCCCGCCGTACGACGTCCGGCCTGGAGACGTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAACAGCGCGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCCGCGACAGTGGGCGGAGTAAAGCTCTCGGAGCCCGCCGCCGACCTCG
CGGTGGCCCTCGCCCTGGCCTCCGCCGCGAGTGACACACCTCTCCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTT
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGACTCGCCGAAGCGCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGGGCGACCCGGGCAAGATCCCTGCGGGCATGAAGGTGCTGGAAGTGGCCGACATAGGGGACGCGCTGCGGGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.142

96.375

0.416
  radA Streptococcus mitis NCTC 12261

43.142

96.375

0.416
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414