Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ81_RS08850 Genome accession   NZ_CP091512
Coordinates   1803226..1804029 (+) Length   267 a.a.
NCBI ID   WP_019958661.1    Uniprot ID   -
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798226..1809029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS08835 (LVJ81_08835) - 1798658..1801009 (-) 2352 WP_155970506.1 DNA internalization-related competence protein ComEC/Rec2 -
  LVJ81_RS08840 (LVJ81_08840) pgeF 1801118..1801873 (-) 756 WP_019958664.1 peptidoglycan editing factor PgeF -
  LVJ81_RS08845 (LVJ81_08845) rluD 1802117..1803211 (-) 1095 WP_019958662.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ81_RS08850 (LVJ81_08850) comL 1803226..1804029 (+) 804 WP_019958661.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ81_RS08855 (LVJ81_08855) - 1804139..1804321 (-) 183 WP_019958660.1 hypothetical protein -
  LVJ81_RS08860 (LVJ81_08860) rnhA 1804464..1804925 (-) 462 WP_019958659.1 ribonuclease HI -
  LVJ81_RS08865 (LVJ81_08865) - 1804912..1805637 (-) 726 WP_019958658.1 methyltransferase domain-containing protein -
  LVJ81_RS08870 (LVJ81_08870) - 1805861..1808173 (+) 2313 WP_019958657.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30642.36 Da        Isoelectric Point: 8.7206

>NTDB_id=651912 LVJ81_RS08850 WP_019958661.1 1803226..1804029(+) (comL) [Vitreoscilla stercoraria strain SAG 1488-6]
MKKILIASCVALVLTGCANKGTSVDKDAQITQSWTVQQLYTEAQDDLNGKNYTRAVKLYDILQSRFPNGRYAQQAQLDKA
YAHYRDAEPAKALAELDSFEKKYPKHENLDYVFYLRGLVAFNEDTSFVTKLASQDWADRDQKANREAYGHFNTLITRWPD
SKYAPDARDRMSKLVVAFAGNEMAIARYYLNRGAYVAAANRAQNVIQHYQNTPFTEEALAILAASYDKLGQTQLSQDTQR
VLLSNFPQSQFSEGWKSNDIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=651912 LVJ81_RS08850 WP_019958661.1 1803226..1804029(+) (comL) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGAAAAAAATTTTAATTGCCAGCTGTGTGGCGCTTGTTTTAACAGGTTGTGCCAATAAAGGTACTTCTGTCGACAAAGA
TGCCCAAATCACCCAATCGTGGACTGTGCAGCAGTTGTATACAGAAGCACAAGATGACTTGAACGGCAAAAACTATACCC
GTGCTGTCAAATTATACGATATTTTGCAATCCCGTTTCCCAAATGGTCGTTATGCTCAACAAGCTCAGTTGGACAAAGCT
TATGCGCATTATCGCGATGCTGAGCCTGCTAAGGCGTTAGCGGAATTGGATAGTTTTGAGAAAAAATATCCAAAACACGA
AAATTTAGATTACGTGTTCTATCTACGCGGTTTGGTGGCTTTCAACGAAGACACCTCTTTTGTGACCAAATTGGCCTCTC
AAGATTGGGCTGACCGTGACCAAAAAGCCAACCGCGAAGCCTATGGCCACTTCAATACATTGATTACACGTTGGCCTGAC
AGCAAATACGCACCTGATGCGCGCGATCGCATGAGCAAATTGGTGGTGGCATTTGCTGGCAATGAAATGGCCATTGCACG
CTATTACTTAAACCGTGGTGCTTATGTTGCCGCAGCCAATCGTGCGCAAAACGTGATTCAACATTATCAAAACACACCGT
TTACCGAAGAGGCATTAGCCATCTTGGCAGCGTCTTACGATAAATTAGGTCAAACCCAATTAAGCCAAGACACGCAACGT
GTGTTGTTAAGCAATTTCCCGCAAAGCCAATTTTCGGAAGGTTGGAAGAGCAATGACATCCCTTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

62.547

100

0.625
  comL Neisseria gonorrhoeae MS11

61.049

100

0.61